-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_64

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106344_t
Valid prediction for snap_scaffold_64-snap.4-T1
Valid prediction for GeneMark_model.106346_t
Valid prediction for GlimmerHMM_glimmerT_61146-T1
Valid prediction for snap_scaffold_64-snap.6-T1
Valid prediction for snap_scaffold_64-snap.2-T1
Valid prediction for snap_scaffold_64-snap.7-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_64-snap.5-T1
Valid prediction for GlimmerHMM_glimmerT_61145-T1
Valid prediction for GeneMark_model.106345_t
Valid prediction for snap_scaffold_64-snap.3-T1
Couldn't classify 24811, 24879
Sorry, prediction GeneMark_model.106343_t fails validation.
(ATG)	 AA	17672-17770	GT	AGG
(GGA)	 AG	18588-18747	GT	CCG
(GGA)	 AG	19051-19206	GT	AGG
(GGG)	 AG	19257-19290	GT	GGG
(GGG)	 AG	19609-19719	GT	AGG
(AGG)	 AG	20082-20102	GT	GAG
(ACA)	 AG	20282-20323	GT	GAG
(AAA)	 AG	20347-20358	GT	ATG
(AGG)	 AG	20658-20692	GT	GGG
(AGA)	 AG	20854-21022	GT	AGG
(GGG)	 AG	22380-22526	GT	CAG
(GTC)	 AG	23608-23670	GT	AGG
(CTC)	 AG	23999-24122	GT	AGG
(GTG)	 AG	24811-24879	GT	AGG
-recovered GeneMark_model.106343_t, initial, 17672, 17770
-recovered GeneMark_model.106343_t, internal, 18588, 18747
-recovered GeneMark_model.106343_t, internal, 19051, 19206
-recovered GeneMark_model.106343_t, internal, 19257, 19290
-recovered GeneMark_model.106343_t, internal, 19609, 19719
-recovered GeneMark_model.106343_t, internal, 20082, 20102
-recovered GeneMark_model.106343_t, internal, 20282, 20323
-recovered GeneMark_model.106343_t, internal, 20347, 20358
-recovered GeneMark_model.106343_t, internal, 20658, 20692
-recovered GeneMark_model.106343_t, internal, 20854, 21022
-recovered GeneMark_model.106343_t, internal, 22380, 22526
-recovered GeneMark_model.106343_t, internal, 23608, 23670
-recovered GeneMark_model.106343_t, internal, 23999, 24122
-recovered GeneMark_model.106343_t, internal, 24811, 24879
Couldn't classify 24811, 24879
Sorry, prediction snap_scaffold_64-snap.1-T1 fails validation.
(ATG)	 CA	19679-19719	GT	AGG
(AGA)	 AG	20567-20676	GT	AGG
(AGA)	 AG	20854-21022	GT	AGG
(GGG)	 AG	22380-22526	GT	CAG
(GTC)	 AG	23599-23670	GT	AGG
(CTC)	 AG	23999-24122	GT	AGG
(GTG)	 AG	24811-24879	GT	AGG
-recovered snap_scaffold_64-snap.1-T1, initial, 19679, 19719
-recovered snap_scaffold_64-snap.1-T1, internal, 20567, 20676
-recovered snap_scaffold_64-snap.1-T1, internal, 20854, 21022
-recovered snap_scaffold_64-snap.1-T1, internal, 22380, 22526
-recovered snap_scaffold_64-snap.1-T1, internal, 23599, 23670
-recovered snap_scaffold_64-snap.1-T1, internal, 23999, 24122
-recovered snap_scaffold_64-snap.1-T1, internal, 24811, 24879
Couldn't classify 24811, 24879
Sorry, prediction Augustus_model.g40677.t1 fails validation.
(ATG)	 TC	11035-11052	GT	TGG
(GTT)	 AG	11298-11412	GT	GAG
(GAG)	 AG	11677-11771	GT	AGG
(ATT)	 AG	12627-12762	GT	CCG
(GCA)	 AG	13113-13197	GT	AGG
(GAA)	 AG	15377-15497	GT	TGG
(AGA)	 AG	16027-16101	GT	AGG
(GGA)	 AG	16189-16269	GT	ATG
(ATG)	 AG	16487-16591	GT	AGG
(GGA)	 AG	18588-18747	GT	CCG
(GGA)	 AG	19051-19206	GT	AGG
(AGA)	 AG	20854-21022	GT	AGG
(GGG)	 AG	22380-22526	GT	CAG
(GTC)	 AG	23599-23670	GT	AGG
(CTC)	 AG	23999-24122	GT	AGG
(GTG)	 AG	24811-24879	GT	AGG
-recovered Augustus_model.g40677.t1, initial, 11035, 11052
-recovered Augustus_model.g40677.t1, initial, 16487, 16591
-recovered Augustus_model.g40677.t1, internal, 11298, 11412
-recovered Augustus_model.g40677.t1, internal, 11677, 11771
-recovered Augustus_model.g40677.t1, internal, 12627, 12762
-recovered Augustus_model.g40677.t1, internal, 13113, 13197
-recovered Augustus_model.g40677.t1, internal, 15377, 15497
-recovered Augustus_model.g40677.t1, internal, 16027, 16101
-recovered Augustus_model.g40677.t1, internal, 16189, 16269
-recovered Augustus_model.g40677.t1, internal, 16487, 16591
-recovered Augustus_model.g40677.t1, internal, 18588, 18747
-recovered Augustus_model.g40677.t1, internal, 19051, 19206
-recovered Augustus_model.g40677.t1, internal, 20854, 21022
-recovered Augustus_model.g40677.t1, internal, 22380, 22526
-recovered Augustus_model.g40677.t1, internal, 23599, 23670
-recovered Augustus_model.g40677.t1, internal, 23999, 24122
-recovered Augustus_model.g40677.t1, internal, 24811, 24879

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5322, rend_intergenic: 2227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8114, rend_intergenic: 7211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9919, rend_intergenic: 8319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14637, rend_intergenic: 11602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 112


building trellis

0.9    
1.8    
2.6    
3.5    
4.4    
5.3    
6.1    
7.0    
7.9    
8.8    
9.6    
10.5    
11.4    
12.3    
13.2    
14.0    
14.9    
15.8    
16.7    
17.5    
18.4    
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20.2    
21.1    
21.9    
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24.6    
25.4    
26.3    
27.2    
28.1    
28.9    
29.8    
30.7    
31.6    
32.5    
33.3    
34.2    
35.1    
36.0    
36.8    
37.7    
38.6    
39.5    
40.4    
41.2    
42.1    
43.0    
43.9    
44.7    
45.6    
46.5    
47.4    
48.2    
49.1    
50.0    
50.9    
51.8    
52.6    
53.5    
54.4    
55.3    
56.1    
57.0    
57.9    
58.8    
59.6    
60.5    
61.4    
62.3    
63.2    
64.0    
64.9    
65.8    
66.7    
67.5    
68.4    
69.3    
70.2    
71.1    
71.9    
72.8    
73.7    
74.6    
75.4    
76.3    
77.2    
78.1    
78.9    
79.8    
80.7    
81.6    
82.5    
83.3    
84.2    
85.1    
86.0    
86.8    
87.7    
88.6    
89.5    
90.4    
91.2    
92.1    
93.0    
93.9    
94.7    
95.6    
96.5    
97.4    
98.2    
99.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 5322, rend_intergenic: 2227  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8114, rend_intergenic: 7211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9919, rend_intergenic: 8319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14637, rend_intergenic: 11602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support