-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_639

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 457, 556
Couldn't classify 3997, 4062
Sorry, prediction snap_scaffold_639-snap.1-T1 fails validation.
(AAA)	 AG	457-556	GT	TGG
(TTC)	 AG	2046-2152	GT	CGG
(TTG)	 AG	3997-4062	GT	TGG
-recovered snap_scaffold_639-snap.1-T1, internal, 457, 556
-recovered snap_scaffold_639-snap.1-T1, internal, 2046, 2152
-recovered snap_scaffold_639-snap.1-T1, internal, 3997, 4062

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41260.t1
Couldn't classify 1157, 1276
Couldn't classify 3904, 4028
Sorry, prediction snap_scaffold_639-snap.2-T1 fails validation.
(AAC)	 AG	1157-1276	GT	GGG
(GTA)	 AG	2789-2937	GT	GGG
(GAT)	 AG	3904-4028	GT	GGG
-recovered snap_scaffold_639-snap.2-T1, internal, 1157, 1276
-recovered snap_scaffold_639-snap.2-T1, internal, 2789, 2937
-recovered snap_scaffold_639-snap.2-T1, internal, 3904, 4028
Couldn't classify 1157, 1276
Couldn't classify 5176, 5215
Sorry, prediction GeneMark_model.108103_t fails validation.
(AAC)	 AG	1157-1276	GT	GGG
(GTG)	 AG	3920-3978	GT	GCG
(GGA)	 AG	3999-4082	GT	GGG
(GGT)	 AG	4107-4133	GT	AGG
(GGG)	 AG	4158-4202	GT	CGG
(AAG)	 AG	4934-4984	GT	AAG
(AGA)	 AG	5020-5025	GT	GGG
(GGA)	 AG	5055-5072	GT	GGG
(GGA)	 AG	5102-5119	GT	AAG
(AGA)	 AG	5145-5150	GT	GGG
(GAG)	 AG	5176-5215	GT	GGG
-recovered GeneMark_model.108103_t, internal, 1157, 1276
-recovered GeneMark_model.108103_t, internal, 3920, 3978
-recovered GeneMark_model.108103_t, internal, 3999, 4082
-recovered GeneMark_model.108103_t, internal, 4107, 4133
-recovered GeneMark_model.108103_t, internal, 4158, 4202
-recovered GeneMark_model.108103_t, internal, 4934, 4984
-recovered GeneMark_model.108103_t, internal, 5020, 5025
-recovered GeneMark_model.108103_t, internal, 5055, 5072
-recovered GeneMark_model.108103_t, internal, 5102, 5119
-recovered GeneMark_model.108103_t, internal, 5145, 5150
-recovered GeneMark_model.108103_t, internal, 5176, 5215

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4062, rend_intergenic: 1211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5238
-exon list size: 30


building trellis

3.1    
6.2    
9.4    
12.5    
15.6    
18.8    
21.9    
25.0    
28.1    
31.2    
34.4    
37.5    
40.6    
43.8    
46.9    
50.0    
53.1    
56.2    
59.4    
62.5    
65.6    
68.8    
71.9    
75.0    
78.1    
81.2    
84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4062, rend_intergenic: 1211  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support