-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_637

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2785, 2833
Sorry, prediction GeneMark_model.108100_t fails validation.
(ATG)	 CC	1589-1611	GT	CAG
(AGA)	 AG	1932-1973	GT	CAG
(AGA)	 AG	2073-2129	GT	CTG
(AGG)	 AG	2211-2249	GT	GGG
(ACT)	 AG	2286-2561	GT	AGG
(AGA)	 AG	2587-2604	GT	GAG
(GAG)	 AG	2629-2763	GT	GAG
(GGT)	 AG	2785-2833	GT	GGG
-recovered GeneMark_model.108100_t, initial, 1589, 1611
-recovered GeneMark_model.108100_t, internal, 1932, 1973
-recovered GeneMark_model.108100_t, internal, 2073, 2129
-recovered GeneMark_model.108100_t, internal, 2211, 2249
-recovered GeneMark_model.108100_t, internal, 2286, 2561
-recovered GeneMark_model.108100_t, internal, 2587, 2604
-recovered GeneMark_model.108100_t, internal, 2629, 2763
-recovered GeneMark_model.108100_t, internal, 2785, 2833

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108099_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5239
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support