-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_636

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5009, 5052
Sorry, prediction snap_scaffold_636-snap.1-T1 fails validation.
(ATG)	 CG	84-256	GT	ATG
(TCA)	 AG	1574-1689	GT	GCG
(TAT)	 AG	4237-4353	GT	ATG
(GCC)	 AG	5009-5052	GT	AGG
-recovered snap_scaffold_636-snap.1-T1, initial, 84, 256
-recovered snap_scaffold_636-snap.1-T1, internal, 1574, 1689
-recovered snap_scaffold_636-snap.1-T1, internal, 4237, 4353
-recovered snap_scaffold_636-snap.1-T1, internal, 5009, 5052
Valid prediction for GlimmerHMM_glimmerT_62070-T1
Valid prediction for Augustus_model.g41259.t1
Valid prediction for GeneMark_model.108097_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 108, 287
Sorry, prediction GeneMark_model.108098_t fails validation.
(GCC)	 AG	108-287	GT	CAG
(ATC)	 AG	683-733	GT	ATG
(ACG)	 AG	774-782	GT	GGG
(TGG)	 AG	809-875	GT	TGG
(CGC)	 AG	923-1009	GA	GAG
-recovered GeneMark_model.108098_t, terminal, 923, 1009
-recovered GeneMark_model.108098_t, internal, 108, 287
-recovered GeneMark_model.108098_t, internal, 683, 733
-recovered GeneMark_model.108098_t, internal, 774, 782
-recovered GeneMark_model.108098_t, internal, 809, 875
Valid prediction for GlimmerHMM_glimmerT_62071-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62071-T1 502-721-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5241
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support