-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_634

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 297, 317
Sorry, prediction GeneMark_model.108093_t fails validation.
(GTG)	 AG	297-317	GT	GGG
(GTC)	 AG	381-467	GT	AAG
(GCC)	 AG	524-622	GT	GGG
(GGA)	 AG	773-799	GT	AGG
(GGA)	 AG	828-851	GT	AGG
(AGG)	 AG	876-912	AG	GAA
-recovered GeneMark_model.108093_t, terminal, 876, 912
-recovered GeneMark_model.108093_t, internal, 297, 317
-recovered GeneMark_model.108093_t, internal, 381, 467
-recovered GeneMark_model.108093_t, internal, 524, 622
-recovered GeneMark_model.108093_t, internal, 773, 799
-recovered GeneMark_model.108093_t, internal, 828, 851
Couldn't classify 1386, 1443
Sorry, prediction snap_scaffold_634-snap.2-T1 fails validation.
(TCA)	 AG	1386-1443	GT	AGG
(GGA)	 AG	2520-2631	GT	AGG
(GAG)	 AG	3158-3306	GT	CAG
(GGT)	 AG	4883-4982	GA	GAG
-recovered snap_scaffold_634-snap.2-T1, terminal, 1386, 1443
-recovered snap_scaffold_634-snap.2-T1, terminal, 4883, 4982
-recovered snap_scaffold_634-snap.2-T1, internal, 1386, 1443
-recovered snap_scaffold_634-snap.2-T1, internal, 2520, 2631
-recovered snap_scaffold_634-snap.2-T1, internal, 3158, 3306
Valid prediction for GlimmerHMM_glimmerT_62068-T1
Valid prediction for Augustus_model.g41258.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108094_t
Couldn't classify 2197, 2359
Sorry, prediction GeneMark_model.108095_t fails validation.
(ACA)	 AG	2197-2359	GT	AAG
(GAG)	 AG	2599-2792	GT	GGG
(GGA)	 AG	2814-2825	GT	GAG
(AGT)	 AG	2849-2869	GT	GAG
(AAA)	 AG	2935-2985	GT	GGG
(AGG)	 AG	3021-3060	AG	AGA
-recovered GeneMark_model.108095_t, terminal, 3021, 3060
-recovered GeneMark_model.108095_t, internal, 2197, 2359
-recovered GeneMark_model.108095_t, internal, 2599, 2792
-recovered GeneMark_model.108095_t, internal, 2814, 2825
-recovered GeneMark_model.108095_t, internal, 2849, 2869
-recovered GeneMark_model.108095_t, internal, 2935, 2985
Valid prediction for snap_scaffold_634-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5255
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support