-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_633

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 86, 181
Sorry, prediction GeneMark_model.108090_t fails validation.
(GGA)	 AG	86-181	GT	AGG
(GGA)	 AG	203-331	GT	GAG
(AGA)	 AG	452-526	GT	GAG
(ACA)	 AG	664-799	GG	AAG
-recovered GeneMark_model.108090_t, terminal, 664, 799
-recovered GeneMark_model.108090_t, internal, 86, 181
-recovered GeneMark_model.108090_t, internal, 203, 331
-recovered GeneMark_model.108090_t, internal, 452, 526
Valid prediction for snap_scaffold_633-snap.3-T1
Couldn't classify 77, 331
Sorry, prediction snap_scaffold_633-snap.2-T1 fails validation.
(GGG)	 AG	77-331	GT	GAG
(GGC)	 AG	655-795	GT	TGG
(GCT)	 AG	1389-1525	GT	AGG
(GAT)	 AG	3180-3208	GA	GAG
-recovered snap_scaffold_633-snap.2-T1, terminal, 3180, 3208
-recovered snap_scaffold_633-snap.2-T1, internal, 77, 331
-recovered snap_scaffold_633-snap.2-T1, internal, 655, 795
-recovered snap_scaffold_633-snap.2-T1, internal, 1389, 1525
Valid prediction for GeneMark_model.108092_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108091_t
Valid prediction for Augustus_model.g41257.t1
Valid prediction for snap_scaffold_633-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1874, rend_intergenic: 77  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5275
-exon list size: 36


building trellis

2.6    
5.3    
7.9    
10.5    
13.2    
15.8    
18.4    
21.1    
23.7    
26.3    
28.9    
31.6    
34.2    
36.8    
39.5    
42.1    
44.7    
47.4    
50.0    
52.6    
55.3    
57.9    
60.5    
63.2    
65.8    
68.4    
71.1    
73.7    
76.3    
78.9    
81.6    
84.2    
86.8    
89.5    
92.1    
94.7    
97.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1874, rend_intergenic: 77  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support