-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_632

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 257, 280
Sorry, prediction GeneMark_model.108089_t fails validation.
(AGA)	 AG	257-280	GT	GAG
(GAG)	 AG	304-315	GC	GAG
(AGA)	 AG	339-482	GT	TGG
(GAT)	 AG	914-976	GT	GAG
(GGG)	 AG	998-1061	GA	GAG
-recovered GeneMark_model.108089_t, terminal, 998, 1061
-recovered GeneMark_model.108089_t, internal, 257, 280
-recovered GeneMark_model.108089_t, internal, 304, 315
-recovered GeneMark_model.108089_t, internal, 339, 482
-recovered GeneMark_model.108089_t, internal, 914, 976

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 655, 855
Couldn't classify 5085, 5166
Sorry, prediction snap_scaffold_632-snap.1-T1 fails validation.
(CAA)	 AG	655-855	GT	GGG
(GAG)	 AG	4777-4874	GT	GGG
(CTC)	 AG	5085-5166	GT	CGG
-recovered snap_scaffold_632-snap.1-T1, internal, 655, 855
-recovered snap_scaffold_632-snap.1-T1, internal, 4777, 4874
-recovered snap_scaffold_632-snap.1-T1, internal, 5085, 5166

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5297
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support