-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_631

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 58, 68
Sorry, prediction GeneMark_model.108087_t fails validation.
(GGA)	 AG	58-68	GT	CTG
(CTA)	 AG	248-278	GT	GGG
(GAT)	 AG	974-1072	GT	TTG
(AGA)	 AG	1267-1312	CA	AAC
-recovered GeneMark_model.108087_t, terminal, 1267, 1312
-recovered GeneMark_model.108087_t, internal, 58, 68
-recovered GeneMark_model.108087_t, internal, 248, 278
-recovered GeneMark_model.108087_t, internal, 974, 1072

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1379, 1483
Sorry, prediction GeneMark_model.108088_t fails validation.
(AGA)	 AG	1379-1483	GT	TTG
(GGA)	 AG	3436-3475	GA	GAG
-recovered GeneMark_model.108088_t, terminal, 3436, 3475
-recovered GeneMark_model.108088_t, internal, 1379, 1483

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5302
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support