-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_630

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108085_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62067-T1
Valid prediction for snap_scaffold_630-snap.2-T1
Valid prediction for GeneMark_model.108086_t
add_exon() Sorry, GeneMark_model.108086_t 672-969-initial-1 is invalid.
Valid prediction for Augustus_model.g41256.t1
Couldn't classify 4865, 4995
Sorry, prediction snap_scaffold_630-snap.1-T1 fails validation.
(ATG)	 GA	1999-2052	GT	AGG
(GAT)	 AG	2514-2589	GT	TGG
(CGA)	 AG	4473-4514	GT	AGG
(GGC)	 AG	4865-4995	GT	CCG
-recovered snap_scaffold_630-snap.1-T1, initial, 1999, 2052
-recovered snap_scaffold_630-snap.1-T1, internal, 2514, 2589
-recovered snap_scaffold_630-snap.1-T1, internal, 4473, 4514
-recovered snap_scaffold_630-snap.1-T1, internal, 4865, 4995

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5306
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support