-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_629

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108082_t
Valid prediction for GlimmerHMM_glimmerT_62066-T1
Valid prediction for GeneMark_model.108084_t
Couldn't classify 3824, 4114
Sorry, prediction snap_scaffold_629-snap.2-T1 fails validation.
(ATG)	 GT	3640-3801	GT	AGG
(GAG)	 AG	3824-4114	GT	CAG
-recovered snap_scaffold_629-snap.2-T1, initial, 3640, 3801
-recovered snap_scaffold_629-snap.2-T1, internal, 3824, 4114
Valid prediction for snap_scaffold_629-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5276, 5288
Sorry, prediction GeneMark_model.108081_t fails validation.
(ATG)	 GG	5037-5065	GT	ATG
(AGG)	 AG	5091-5123	GT	AGG
(AGG)	 AG	5179-5253	GT	GCG
(TGA)	 AG	5276-5288	GT	GAG
-recovered GeneMark_model.108081_t, initial, 5037, 5065
-recovered GeneMark_model.108081_t, internal, 5091, 5123
-recovered GeneMark_model.108081_t, internal, 5179, 5253
-recovered GeneMark_model.108081_t, internal, 5276, 5288
Valid prediction for GeneMark_model.108083_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5312
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support