-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_627 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Couldn't classify 168, 176 Couldn't classify 4419, 4474 Sorry, prediction GeneMark_model.108079_t fails validation. (AGA) AG 168-176 GT GGG (AGA) AG 200-550 GT GAG (AGT) AG 583-655 GT CCG (GAC) AG 3294-3389 GT CAG (GCC) AG 3415-3469 GT AGG (GGT) AG 3543-3570 GT AGG (GGT) AG 3602-3607 GT GGG (GGG) AG 3642-3650 GT GGG (TAT) AG 3737-3751 GT GAG (GGT) AG 3831-3845 GT AGG (TAT) AG 3866-3883 GT GGG (GGT) AG 3909-3932 GT GGG (GGT) AG 3966-3980 GT GGG (GGA) AG 4177-4263 GT GTG (AGA) AG 4286-4369 GT GGG (GGA) AG 4390-4398 GT GAG (GGA) AG 4419-4474 GT GGG -recovered GeneMark_model.108079_t, terminal, 3543, 3570 -recovered GeneMark_model.108079_t, terminal, 3831, 3845 -recovered GeneMark_model.108079_t, internal, 168, 176 -recovered GeneMark_model.108079_t, internal, 200, 550 -recovered GeneMark_model.108079_t, internal, 583, 655 -recovered GeneMark_model.108079_t, internal, 3294, 3389 -recovered GeneMark_model.108079_t, internal, 3415, 3469 -recovered GeneMark_model.108079_t, internal, 3543, 3570 -recovered GeneMark_model.108079_t, internal, 3602, 3607 -recovered GeneMark_model.108079_t, internal, 3642, 3650 -recovered GeneMark_model.108079_t, internal, 3737, 3751 -recovered GeneMark_model.108079_t, internal, 3831, 3845 -recovered GeneMark_model.108079_t, internal, 3866, 3883 -recovered GeneMark_model.108079_t, internal, 3909, 3932 -recovered GeneMark_model.108079_t, internal, 3966, 3980 -recovered GeneMark_model.108079_t, internal, 4177, 4263 -recovered GeneMark_model.108079_t, internal, 4286, 4369 -recovered GeneMark_model.108079_t, internal, 4390, 4398 -recovered GeneMark_model.108079_t, internal, 4419, 4474 Couldn't classify 4138, 4482 Sorry, prediction snap_scaffold_627-snap.1-T1 fails validation. (ATG) AC 116-655 GT CCG (GAC) AG 3294-3389 GT CAG (GAT) AG 4138-4482 GT CGG -recovered snap_scaffold_627-snap.1-T1, initial, 116, 655 -recovered snap_scaffold_627-snap.1-T1, internal, 3294, 3389 -recovered snap_scaffold_627-snap.1-T1, internal, 4138, 4482 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 150, 211 Couldn't classify 5236, 5323 Sorry, prediction Augustus_model.g41254.t1 fails validation. (AGT) AG 150-211 GT AGG (CTG) AG 1172-1283 GT ATG (GCC) AG 1834-2037 GT AGG (AGT) AG 2548-2636 GT AGG (GTC) AG 3003-3089 GT AGG (GCA) AG 4661-4793 GT CTG (GCC) AG 5236-5323 GA -recovered Augustus_model.g41254.t1, internal, 150, 211 -recovered Augustus_model.g41254.t1, internal, 1172, 1283 -recovered Augustus_model.g41254.t1, internal, 1834, 2037 -recovered Augustus_model.g41254.t1, internal, 2548, 2636 -recovered Augustus_model.g41254.t1, internal, 3003, 3089 -recovered Augustus_model.g41254.t1, internal, 4661, 4793 Couldn't classify 150, 211 Sorry, prediction GlimmerHMM_glimmerT_62064-T1 fails validation. (AGT) AG 150-211 GT AGG (CTG) AG 1172-1258 GT GGG (GGA) AG 1851-2037 GT AGG (GTC) AG 3003-3076 GG GAG -recovered GlimmerHMM_glimmerT_62064-T1, terminal, 3003, 3076 -recovered GlimmerHMM_glimmerT_62064-T1, internal, 150, 211 -recovered GlimmerHMM_glimmerT_62064-T1, internal, 1172, 1258 -recovered GlimmerHMM_glimmerT_62064-T1, internal, 1851, 2037 Couldn't classify 1872, 2037 Couldn't classify 3003, 3089 Sorry, prediction pasa_asmbl_49420.p1 fails validation. (CTG) GT 1872-2037 GT AGG (AGT) AG 2548-2636 GT AGG (GTC) AG 3003-3089 GT AGG -recovered pasa_asmbl_49420.p1, internal, 2548, 2636 -recovered pasa_asmbl_49420.p1, internal, 3003, 3089 Couldn't classify 150, 211 Couldn't classify 4661, 4729 Sorry, prediction snap_scaffold_627-snap.2-T1 fails validation. (AGT) AG 150-211 GT AGG (CTG) AG 1172-1258 GT GGG (GGA) AG 1851-2037 GT AGG (AGT) AG 2548-2636 GT AGG (GTC) AG 3003-3089 GT AGG (GCA) AG 4661-4729 GT TCG -recovered snap_scaffold_627-snap.2-T1, internal, 150, 211 -recovered snap_scaffold_627-snap.2-T1, internal, 1172, 1258 -recovered snap_scaffold_627-snap.2-T1, internal, 1851, 2037 -recovered snap_scaffold_627-snap.2-T1, internal, 2548, 2636 -recovered snap_scaffold_627-snap.2-T1, internal, 3003, 3089 -recovered snap_scaffold_627-snap.2-T1, internal, 4661, 4729 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4482, rend_intergenic: 595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 5323 -exon list size: 53 building trellis 1.8 3.6 5.5 7.3 9.1 10.9 12.7 14.5 16.4 18.2 20.0 21.8 23.6 25.5 27.3 29.1 30.9 32.7 34.5 36.4 38.2 40.0 41.8 43.6 45.5 47.3 49.1 50.9 52.7 54.5 56.4 58.2 60.0 61.8 63.6 65.5 67.3 69.1 70.9 72.7 74.5 76.4 78.2 80.0 81.8 83.6 85.5 87.3 89.1 90.9 92.7 94.5 96.4 98.2 -found 1 predictions from path traversal Error with prediction: snap lend_intergenic: 4482, rend_intergenic: 595 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 1 predictions persist after filtering for low support