-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_625

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108076_t
Couldn't classify 409, 534
Sorry, prediction snap_scaffold_625-snap.1-T1 fails validation.
(CTC)	 AG	409-534	GT	GGG
(GAT)	 AG	3945-3999	AA	AGA
-recovered snap_scaffold_625-snap.1-T1, terminal, 3945, 3999
-recovered snap_scaffold_625-snap.1-T1, internal, 409, 534

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2058, 2150
Sorry, prediction GeneMark_model.108077_t fails validation.
(AGA)	 AG	2058-2150	GT	CAG
(GAG)	 AG	2173-2181	GT	AGG
(ACA)	 AG	2219-2524	GT	CTG
(GAG)	 AG	2934-3176	GT	TTG
(TGA)	 AG	3206-3239	GT	AGG
(ACC)	 AG	3275-3307	AC	AAA
-recovered GeneMark_model.108077_t, terminal, 3275, 3307
-recovered GeneMark_model.108077_t, internal, 2058, 2150
-recovered GeneMark_model.108077_t, internal, 2173, 2181
-recovered GeneMark_model.108077_t, internal, 2219, 2524
-recovered GeneMark_model.108077_t, internal, 2934, 3176
-recovered GeneMark_model.108077_t, internal, 3206, 3239
Couldn't classify 483, 500
Sorry, prediction snap_scaffold_625-snap.3-T1 fails validation.
(CTC)	 AG	483-500	GT	AAG
(AGA)	 AG	2155-2520	AA	GAA
-recovered snap_scaffold_625-snap.3-T1, terminal, 2155, 2520
-recovered snap_scaffold_625-snap.3-T1, internal, 483, 500
Valid prediction for GeneMark_model.108075_t
Couldn't classify 4831, 4917
Sorry, prediction snap_scaffold_625-snap.2-T1 fails validation.
(ATG)	 AC	3058-3168	GT	TTG
(GTG)	 AG	4831-4917	GT	TTG
-recovered snap_scaffold_625-snap.2-T1, initial, 3058, 3168
-recovered snap_scaffold_625-snap.2-T1, internal, 4831, 4917

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3999, rend_intergenic: 423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5339
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3999, rend_intergenic: 423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support