-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_624

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108074_t
Couldn't classify 547, 673
Sorry, prediction GeneMark_model.108069_t fails validation.
(TGG)	 AG	547-673	GT	CGG
(GCC)	 AG	717-839	GT	GGG
(ACA)	 AG	861-896	GT	GAG
(AAA)	 AG	927-960	AG	GAA
-recovered GeneMark_model.108069_t, terminal, 861, 896
-recovered GeneMark_model.108069_t, terminal, 927, 960
-recovered GeneMark_model.108069_t, internal, 547, 673
-recovered GeneMark_model.108069_t, internal, 717, 839
-recovered GeneMark_model.108069_t, internal, 861, 896
Valid prediction for GeneMark_model.108073_t
Valid prediction for snap_scaffold_624-snap.2-T1
Valid prediction for GeneMark_model.108071_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 260, 382
Sorry, prediction snap_scaffold_624-snap.3-T1 fails validation.
(CGT)	 AG	260-382	GT	CAG
(TCT)	 AG	1174-1234	GA	GAG
-recovered snap_scaffold_624-snap.3-T1, terminal, 1174, 1234
-recovered snap_scaffold_624-snap.3-T1, internal, 260, 382
Valid prediction for GeneMark_model.108072_t
Valid prediction for snap_scaffold_624-snap.1-T1
Couldn't classify 260, 382
Sorry, prediction GlimmerHMM_glimmerT_62062-T1 fails validation.
(CGT)	 AG	260-382	GT	CAG
(GCT)	 AG	3982-4069	GC	AAG
-recovered GlimmerHMM_glimmerT_62062-T1, terminal, 3982, 4069
-recovered GlimmerHMM_glimmerT_62062-T1, internal, 260, 382
-recovered GlimmerHMM_glimmerT_62062-T1, internal, 3982, 4069
Valid prediction for GeneMark_model.108070_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3773, rend_intergenic: 1584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 4117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5350
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 3773, rend_intergenic: 1584  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 5114, rend_intergenic: 4117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support