-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_623

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108067_t
Couldn't classify 4659, 4959
Sorry, prediction GeneMark_model.108068_t fails validation.
(ATG)	 AG	4473-4483	GT	GAG
(GGG)	 AG	4512-4634	GT	GAG
(AAA)	 AG	4659-4959	GT	ACG
-recovered GeneMark_model.108068_t, initial, 4473, 4483
-recovered GeneMark_model.108068_t, internal, 4473, 4483
-recovered GeneMark_model.108068_t, internal, 4512, 4634
-recovered GeneMark_model.108068_t, internal, 4659, 4959
Couldn't classify 1849, 2082
Sorry, prediction snap_scaffold_623-snap.2-T1 fails validation.
(AAG)	 AG	1849-2082	GT	GGG
(GAG)	 AG	2110-2393	CG	GAC
-recovered snap_scaffold_623-snap.2-T1, terminal, 2110, 2393
-recovered snap_scaffold_623-snap.2-T1, internal, 1849, 2082

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 414, 581
Sorry, prediction GlimmerHMM_glimmerT_62061-T1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2169	GT	AGG
(GTC)	 AG	3801-3937	GT	AGG
(TCC)	 AG	5079-5138	CC	GAC
-recovered GlimmerHMM_glimmerT_62061-T1, terminal, 5079, 5138
-recovered GlimmerHMM_glimmerT_62061-T1, internal, 414, 581
-recovered GlimmerHMM_glimmerT_62061-T1, internal, 1562, 1777
-recovered GlimmerHMM_glimmerT_62061-T1, internal, 2022, 2169
-recovered GlimmerHMM_glimmerT_62061-T1, internal, 3801, 3937
Couldn't classify 414, 581
Sorry, prediction snap_scaffold_623-snap.1-T1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2169	GT	AGG
(GTC)	 AG	3801-3937	GT	AGG
(TCC)	 AG	5079-5138	CC	GAC
-recovered snap_scaffold_623-snap.1-T1, terminal, 5079, 5138
-recovered snap_scaffold_623-snap.1-T1, internal, 414, 581
-recovered snap_scaffold_623-snap.1-T1, internal, 1562, 1777
-recovered snap_scaffold_623-snap.1-T1, internal, 2022, 2169
-recovered snap_scaffold_623-snap.1-T1, internal, 3801, 3937
Couldn't classify 3801, 3937
Sorry, prediction GeneMark_model.108066_t fails validation.
(ATG)	 CA	3741-3762	GT	CAG
(GTC)	 AG	3801-3937	GT	AGG
-recovered GeneMark_model.108066_t, initial, 3741, 3762
-recovered GeneMark_model.108066_t, internal, 3801, 3937
Couldn't classify 414, 581
Sorry, prediction Augustus_model.g41252.t1 fails validation.
(GTG)	 AG	414-581	GT	AGG
(GAT)	 AG	1562-1777	GT	CAG
(GGC)	 AG	2022-2169	GT	AGG
(GTC)	 AG	3801-3937	GT	AGG
(TCC)	 AG	5079-5138	CC	GAC
-recovered Augustus_model.g41252.t1, terminal, 5079, 5138
-recovered Augustus_model.g41252.t1, internal, 414, 581
-recovered Augustus_model.g41252.t1, internal, 1562, 1777
-recovered Augustus_model.g41252.t1, internal, 2022, 2169
-recovered Augustus_model.g41252.t1, internal, 3801, 3937

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4938, rend_intergenic: 1849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5351
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4938, rend_intergenic: 1849  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support