-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_622

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 84
Sorry, prediction GeneMark_model.108064_t fails validation.
(GAG)	 AG	10-84	GT	GAG
(AGG)	 AG	105-167	GT	CGG
(CTC)	 AG	191-304	GT	ACG
(AGA)	 AG	524-548	GA	GAG
-recovered GeneMark_model.108064_t, terminal, 524, 548
-recovered GeneMark_model.108064_t, internal, 10, 84
-recovered GeneMark_model.108064_t, internal, 105, 167
-recovered GeneMark_model.108064_t, internal, 191, 304
Couldn't classify 4917, 4967
Sorry, prediction snap_scaffold_622-snap.1-T1 fails validation.
(ATG)	 AG	13-202	GT	GAG
(ATT)	 AG	1264-1292	GT	AGG
(ACG)	 AG	3501-3887	GT	AGG
(AGG)	 AG	3904-3981	GT	GGG
(GTG)	 AG	4917-4967	GT	GGG
-recovered snap_scaffold_622-snap.1-T1, initial, 13, 202
-recovered snap_scaffold_622-snap.1-T1, internal, 13, 202
-recovered snap_scaffold_622-snap.1-T1, internal, 1264, 1292
-recovered snap_scaffold_622-snap.1-T1, internal, 3501, 3887
-recovered snap_scaffold_622-snap.1-T1, internal, 3904, 3981
-recovered snap_scaffold_622-snap.1-T1, internal, 4917, 4967

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62060-T1
Valid prediction for GeneMark_model.108065_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5354
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support