-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41250.t1
Valid prediction for GlimmerHMM_glimmerT_62058-T1
Couldn't classify 57, 119
Sorry, prediction GeneMark_model.108059_t fails validation.
(AGA)	 AG	57-119	GT	AAG
(AGA)	 AG	195-245	GT	CTG
(GGA)	 AG	296-364	GT	CAG
(GGA)	 AG	645-689	GT	GAG
(AGA)	 AG	749-803	AG	AGA
-recovered GeneMark_model.108059_t, terminal, 749, 803
-recovered GeneMark_model.108059_t, internal, 57, 119
-recovered GeneMark_model.108059_t, internal, 195, 245
-recovered GeneMark_model.108059_t, internal, 296, 364
-recovered GeneMark_model.108059_t, internal, 645, 689
Valid prediction for snap_scaffold_620-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108060_t
Valid prediction for Augustus_model.g41249.t1
Couldn't classify 534, 556
Sorry, prediction GeneMark_model.108061_t fails validation.
(GTC)	 AG	534-556	GT	CTG
(TGG)	 AG	580-602	GT	AGG
(GTG)	 AG	703-814	GT	GAG
(TGA)	 AG	1016-1045	GT	GAG
(GGG)	 AG	1069-1126	CG	AGC
-recovered GeneMark_model.108061_t, terminal, 1069, 1126
-recovered GeneMark_model.108061_t, internal, 534, 556
-recovered GeneMark_model.108061_t, internal, 580, 602
-recovered GeneMark_model.108061_t, internal, 703, 814
-recovered GeneMark_model.108061_t, internal, 1016, 1045

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5364
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support