-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_619

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108057_t
Couldn't classify 517, 708
Sorry, prediction snap_scaffold_619-snap.2-T1 fails validation.
(GTC)	 AG	517-708	GT	GCG
(AGG)	 AG	1996-2074	GT	ATG
(CAT)	 AG	4432-4475	TT	AAT
-recovered snap_scaffold_619-snap.2-T1, terminal, 4432, 4475
-recovered snap_scaffold_619-snap.2-T1, internal, 517, 708
-recovered snap_scaffold_619-snap.2-T1, internal, 1996, 2074

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4836, 4978
Sorry, prediction snap_scaffold_619-snap.1-T1 fails validation.
(ATG)	 GC	860-965	GT	CGG
(CGA)	 AG	4836-4978	GT	ATG
-recovered snap_scaffold_619-snap.1-T1, initial, 860, 965
-recovered snap_scaffold_619-snap.1-T1, internal, 4836, 4978
Valid prediction for GeneMark_model.108056_t
Valid prediction for GeneMark_model.108058_t
Valid prediction for GlimmerHMM_glimmerT_62057-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4506, rend_intergenic: 517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5365
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4506, rend_intergenic: 517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support