-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_617

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41246.t1
Valid prediction for GlimmerHMM_glimmerT_62053-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62053-T1 5019-5229-terminal-1 is invalid.
Valid prediction for Augustus_model.g41245.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 96, 117
Sorry, prediction GeneMark_model.108050_t fails validation.
(CAG)	 AG	96-117	GT	AGG
(GCG)	 AG	283-333	GT	CGG
(CAT)	 AG	797-811	GT	GAG
(GAC)	 AG	840-848	GT	AGG
(GGA)	 AG	991-1108	GG	GAG
-recovered GeneMark_model.108050_t, terminal, 840, 848
-recovered GeneMark_model.108050_t, terminal, 991, 1108
-recovered GeneMark_model.108050_t, internal, 96, 117
-recovered GeneMark_model.108050_t, internal, 283, 333
-recovered GeneMark_model.108050_t, internal, 797, 811
-recovered GeneMark_model.108050_t, internal, 840, 848

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5367
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support