-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_615

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3476, 3595
Couldn't classify 3686, 3811
Sorry, prediction snap_scaffold_615-snap.1-T1 fails validation.
(CAT)	 AG	3476-3595	GT	GTG
(CTA)	 AG	3686-3811	GT	AGG
-recovered snap_scaffold_615-snap.1-T1, internal, 3476, 3595
-recovered snap_scaffold_615-snap.1-T1, internal, 3686, 3811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11, 28
Sorry, prediction GeneMark_model.108045_t fails validation.
(AGA)	 AG	11-28	GC	AGG
(ACA)	 AG	51-86	GC	AGG
(ACA)	 AG	109-114	GC	AGG
(ACA)	 AG	137-142	GC	AGG
(ACA)	 AG	247-340	GC	GAG
(GGA)	 AG	359-483	GT	GAG
(AGA)	 AG	505-513	GT	GAG
(GGA)	 AG	539-658	GT	TGG
(GGG)	 AG	2166-2246	GT	AGG
(GTG)	 AG	5078-5203	GT	GAG
(ACA)	 AG	5229-5304	AA	AGA
-recovered GeneMark_model.108045_t, terminal, 11, 28
add_exon() Sorry, GeneMark_model.108045_t 51-86-terminal-1 is invalid.
-recovered GeneMark_model.108045_t, terminal, 51, 86
-recovered GeneMark_model.108045_t, terminal, 109, 114
-recovered GeneMark_model.108045_t, terminal, 137, 142
-recovered GeneMark_model.108045_t, terminal, 5229, 5304
-recovered GeneMark_model.108045_t, internal, 11, 28
-recovered GeneMark_model.108045_t, internal, 51, 86
-recovered GeneMark_model.108045_t, internal, 109, 114
-recovered GeneMark_model.108045_t, internal, 137, 142
-recovered GeneMark_model.108045_t, internal, 247, 340
-recovered GeneMark_model.108045_t, internal, 359, 483
-recovered GeneMark_model.108045_t, internal, 505, 513
-recovered GeneMark_model.108045_t, internal, 539, 658
-recovered GeneMark_model.108045_t, internal, 2166, 2246
-recovered GeneMark_model.108045_t, internal, 5078, 5203

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5371
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support