-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_610

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108032_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 325, 452
Couldn't classify 4864, 4936
Sorry, prediction Augustus_model.g41240.t1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GTA)	 AG	720-859	GT	AGG
(GTC)	 AG	4194-4410	GT	TGG
(CAT)	 AG	4864-4936	GT	AGG
-recovered Augustus_model.g41240.t1, internal, 325, 452
-recovered Augustus_model.g41240.t1, internal, 720, 859
-recovered Augustus_model.g41240.t1, internal, 4194, 4410
-recovered Augustus_model.g41240.t1, internal, 4864, 4936
Valid prediction for GeneMark_model.108031_t
Couldn't classify 325, 452
Sorry, prediction snap_scaffold_610-snap.1-T1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GTA)	 AG	720-859	GT	AGG
(GTC)	 AG	4194-4604	AG	AGA
-recovered snap_scaffold_610-snap.1-T1, terminal, 4194, 4604
-recovered snap_scaffold_610-snap.1-T1, internal, 325, 452
-recovered snap_scaffold_610-snap.1-T1, internal, 720, 859
Couldn't classify 294, 452
Sorry, prediction GeneMark_model.108033_t fails validation.
(CTG)	 AG	294-452	GT	AGG
(GGC)	 AG	750-859	GT	AGG
(CCT)	 AG	888-893	CT	GAC
-recovered GeneMark_model.108033_t, terminal, 888, 893
-recovered GeneMark_model.108033_t, internal, 294, 452
-recovered GeneMark_model.108033_t, internal, 750, 859
Couldn't classify 325, 452
Sorry, prediction GlimmerHMM_glimmerT_62045-T1 fails validation.
(GCA)	 AG	325-452	GT	AGG
(GGC)	 AG	750-859	GT	AGG
(GCT)	 AG	912-1063	GT	ATG
(CAG)	 AG	4253-4604	AG	AGA
-recovered GlimmerHMM_glimmerT_62045-T1, terminal, 4253, 4604
-recovered GlimmerHMM_glimmerT_62045-T1, internal, 325, 452
-recovered GlimmerHMM_glimmerT_62045-T1, internal, 750, 859
-recovered GlimmerHMM_glimmerT_62045-T1, internal, 912, 1063
Couldn't classify 5032, 5181
Sorry, prediction GeneMark_model.108030_t fails validation.
(ATG)	 GA	4819-4913	GT	GTG
(GGA)	 AG	4970-5008	GT	TGG
(GGG)	 AG	5032-5181	GT	GAG
-recovered GeneMark_model.108030_t, initial, 4819, 4913
-recovered GeneMark_model.108030_t, internal, 4970, 5008
-recovered GeneMark_model.108030_t, internal, 5032, 5181

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5420
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support