-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_61

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106326_t
Valid prediction for GlimmerHMM_glimmerT_61124-T1
Valid prediction for snap_scaffold_61-snap.6-T1
Valid prediction for GlimmerHMM_glimmerT_61127-T1
Couldn't classify 578, 630
Sorry, prediction GeneMark_model.106325_t fails validation.
(AGT)	 AG	578-630	GT	AGG
(AGC)	 AG	1225-1323	GT	CAG
(AGC)	 AG	3240-3338	GT	CAG
(GAG)	 AG	4054-4066	GT	GAG
(GGT)	 AG	4118-4124	CG	AAC
-recovered GeneMark_model.106325_t, terminal, 4118, 4124
-recovered GeneMark_model.106325_t, internal, 578, 630
-recovered GeneMark_model.106325_t, internal, 1225, 1323
-recovered GeneMark_model.106325_t, internal, 3240, 3338
-recovered GeneMark_model.106325_t, internal, 4054, 4066

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 318, 422
Sorry, prediction Augustus_model.g40665.t1 fails validation.
(ATC)	 AG	318-422	GT	CTG
(TTC)	 AG	1000-1101	GT	TGG
(GTC)	 AG	1297-1470	GT	TGG
(AAA)	 AG	1767-1946	CC	GAC
-recovered Augustus_model.g40665.t1, terminal, 1767, 1946
-recovered Augustus_model.g40665.t1, internal, 318, 422
-recovered Augustus_model.g40665.t1, internal, 1000, 1101
-recovered Augustus_model.g40665.t1, internal, 1297, 1470
Valid prediction for GlimmerHMM_glimmerT_61128-T1
Valid prediction for snap_scaffold_61-snap.1-T1
Couldn't classify 318, 422
Sorry, prediction GeneMark_model.106328_t fails validation.
(ATC)	 AG	318-422	GT	CTG
(TTC)	 AG	1000-1101	GT	TGG
(TTT)	 AG	1267-1470	GT	TGG
(AAA)	 AG	1767-1946	CC	GAC
-recovered GeneMark_model.106328_t, terminal, 1767, 1946
-recovered GeneMark_model.106328_t, internal, 318, 422
-recovered GeneMark_model.106328_t, internal, 1000, 1101
-recovered GeneMark_model.106328_t, internal, 1267, 1470
Valid prediction for GlimmerHMM_glimmerT_61125-T1
Valid prediction for snap_scaffold_61-snap.5-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g40664.t1
Valid prediction for snap_scaffold_61-snap.2-T1
Valid prediction for GeneMark_model.106327_t
Valid prediction for snap_scaffold_61-snap.3-T1
Valid prediction for snap_scaffold_61-snap.4-T1
Couldn't classify 318, 422
Sorry, prediction GlimmerHMM_glimmerT_61129-T1 fails validation.
(ATC)	 AG	318-422	GT	CTG
(TTC)	 AG	1000-1101	GT	TGG
(TTT)	 AG	1267-1470	GT	TGG
(AAA)	 AG	1767-1946	CC	GAC
-recovered GlimmerHMM_glimmerT_61129-T1, terminal, 1767, 1946
-recovered GlimmerHMM_glimmerT_61129-T1, internal, 318, 422
-recovered GlimmerHMM_glimmerT_61129-T1, internal, 1000, 1101
-recovered GlimmerHMM_glimmerT_61129-T1, internal, 1267, 1470
Couldn't classify 24149, 24250
Sorry, prediction Augustus_model.g40663.t1 fails validation.
(ATG)	 AC	20002-20047	GT	CGG
(GTT)	 AG	20181-20369	GT	AGG
(GAA)	 AG	20661-20762	GT	AGG
(GAG)	 AG	20904-21115	GT	ATG
(GAT)	 AG	21411-21516	GT	CGG
(GTT)	 AG	21650-21880	GT	TGG
(GAA)	 AG	22132-22233	GT	AGG
(GAG)	 AG	22376-22600	GT	TGG
(GTT)	 AG	23665-23883	GT	AGG
(GAA)	 AG	24149-24250	GT	AGG
-recovered Augustus_model.g40663.t1, initial, 20002, 20047
-recovered Augustus_model.g40663.t1, internal, 20181, 20369
-recovered Augustus_model.g40663.t1, internal, 20661, 20762
-recovered Augustus_model.g40663.t1, internal, 20904, 21115
-recovered Augustus_model.g40663.t1, internal, 21411, 21516
-recovered Augustus_model.g40663.t1, internal, 21650, 21880
-recovered Augustus_model.g40663.t1, internal, 22132, 22233
-recovered Augustus_model.g40663.t1, internal, 22376, 22600
-recovered Augustus_model.g40663.t1, internal, 23665, 23883
-recovered Augustus_model.g40663.t1, internal, 24149, 24250
Valid prediction for GlimmerHMM_glimmerT_61126-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 18857, rend_intergenic: 14964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 107


building trellis

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33.0    
33.9    
34.9    
35.8    
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37.6    
38.5    
39.4    
40.4    
41.3    
42.2    
43.1    
44.0    
45.0    
45.9    
46.8    
47.7    
48.6    
49.5    
50.5    
51.4    
52.3    
53.2    
54.1    
55.0    
56.0    
56.9    
57.8    
58.7    
59.6    
60.6    
61.5    
62.4    
63.3    
64.2    
65.1    
66.1    
67.0    
67.9    
68.8    
69.7    
70.6    
71.6    
72.5    
73.4    
74.3    
75.2    
76.1    
77.1    
78.0    
78.9    
79.8    
80.7    
81.7    
82.6    
83.5    
84.4    
85.3    
86.2    
87.2    
88.1    
89.0    
89.9    
90.8    
91.7    
92.7    
93.6    
94.5    
95.4    
96.3    
97.2    
98.2    
99.1    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 18857, rend_intergenic: 14964  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support