-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_609

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 892, 909
Couldn't classify 5350, 5419
Sorry, prediction GeneMark_model.108029_t fails validation.
(TGC)	 AG	892-909	GT	CCG
(AGA)	 AG	3733-3738	GT	GTG
(AAG)	 AG	5004-5039	GT	CAG
(AGG)	 AG	5136-5204	GT	GAG
(ATG)	 AG	5226-5276	GT	AAG
(AGA)	 AG	5318-5326	GT	GAG
(AGA)	 AG	5350-5419	GT	CAG
add_exon() Sorry, GeneMark_model.108029_t 5226-5276-initial-1 is invalid.
-recovered GeneMark_model.108029_t, initial, 5226, 5276
-recovered GeneMark_model.108029_t, internal, 892, 909
-recovered GeneMark_model.108029_t, internal, 3733, 3738
-recovered GeneMark_model.108029_t, internal, 5004, 5039
-recovered GeneMark_model.108029_t, internal, 5136, 5204
-recovered GeneMark_model.108029_t, internal, 5226, 5276
-recovered GeneMark_model.108029_t, internal, 5318, 5326
-recovered GeneMark_model.108029_t, internal, 5350, 5419

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5427
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support