-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_607

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3961, 3970
Sorry, prediction GeneMark_model.108026_t fails validation.
(ATG)	 GT	3709-3716	GT	TTG
(AGG)	 AG	3738-3794	GT	GAG
(AGA)	 AG	3821-3850	GT	AGG
(GGG)	 AG	3874-3882	GT	AGG
(AGA)	 AG	3905-3910	GT	AGG
(AGG)	 AG	3932-3940	GT	GAG
(GTA)	 AG	3961-3970	GT	CTG
-recovered GeneMark_model.108026_t, initial, 3709, 3716
-recovered GeneMark_model.108026_t, internal, 3738, 3794
-recovered GeneMark_model.108026_t, internal, 3821, 3850
-recovered GeneMark_model.108026_t, internal, 3874, 3882
-recovered GeneMark_model.108026_t, internal, 3905, 3910
-recovered GeneMark_model.108026_t, internal, 3932, 3940
-recovered GeneMark_model.108026_t, internal, 3961, 3970

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108025_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5433
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support