-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_606

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 471, 581
Sorry, prediction GeneMark_model.108024_t fails validation.
(GGG)	 AG	471-581	GT	GCG
(AGG)	 AG	725-886	GT	GGG
(GAG)	 AG	984-1148	GT	GGG
(GGA)	 AG	1241-1354	GT	TGG
(GGA)	 AG	1563-1691	GT	AAG
(GGA)	 AG	1878-1895	GT	GGG
(AGG)	 AG	1920-2093	GT	GCG
(AGA)	 AG	2182-2199	GT	AGG
(GGG)	 AG	2229-2445	CT	AAC
-recovered GeneMark_model.108024_t, terminal, 2229, 2445
-recovered GeneMark_model.108024_t, internal, 471, 581
-recovered GeneMark_model.108024_t, internal, 725, 886
-recovered GeneMark_model.108024_t, internal, 984, 1148
-recovered GeneMark_model.108024_t, internal, 1241, 1354
-recovered GeneMark_model.108024_t, internal, 1563, 1691
-recovered GeneMark_model.108024_t, internal, 1878, 1895
-recovered GeneMark_model.108024_t, internal, 1920, 2093
-recovered GeneMark_model.108024_t, internal, 2182, 2199
Valid prediction for GlimmerHMM_glimmerT_62042-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_606-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5433
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support