-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_605

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 4559, 4640
Sorry, prediction GlimmerHMM_glimmerT_62041-T1 fails validation.
(ATG)	 AC	855-1082	GT	AGG
(GGA)	 AG	1407-1475	GT	AGG
(CTG)	 AG	1565-1609	GT	GGG
(GCC)	 AG	1731-1806	GT	GGG
(GTA)	 AG	2373-2529	GT	AAG
(TGA)	 AG	2606-2747	GT	TGG
(GTT)	 AG	2829-2972	GT	AGG
(ACC)	 AG	3167-3195	GT	CTG
(GAC)	 AG	3520-3727	GT	AGG
(AGT)	 AG	4038-4215	GT	AGG
(GCT)	 AG	4559-4640	GT	TGG
-recovered GlimmerHMM_glimmerT_62041-T1, initial, 855, 1082
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 1407, 1475
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 1565, 1609
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 1731, 1806
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 2373, 2529
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 2606, 2747
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 2829, 2972
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 3167, 3195
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 3520, 3727
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 4038, 4215
-recovered GlimmerHMM_glimmerT_62041-T1, internal, 4559, 4640
Valid prediction for Augustus_model.g41239.t1
Valid prediction for GeneMark_model.108021_t
Couldn't classify 903, 1082
Sorry, prediction snap_scaffold_605-snap.1-T1 fails validation.
(GTG)	 AG	903-1082	GT	AGG
(GGA)	 AG	1407-1475	GT	AGG
(CTG)	 AG	1565-1609	GT	GGG
(GCC)	 AG	1731-1806	GT	GGG
(GTA)	 AG	2373-2529	GT	AAG
(TGA)	 AG	2606-2747	GT	TGG
(GTT)	 AG	2829-2972	GT	AGG
(GTC)	 AG	3542-3727	GT	AGG
(AGT)	 AG	4038-4215	GT	AGG
(GCT)	 AG	4559-4644	CC	AAC
-recovered snap_scaffold_605-snap.1-T1, terminal, 4559, 4644
-recovered snap_scaffold_605-snap.1-T1, internal, 903, 1082
-recovered snap_scaffold_605-snap.1-T1, internal, 1407, 1475
-recovered snap_scaffold_605-snap.1-T1, internal, 1565, 1609
-recovered snap_scaffold_605-snap.1-T1, internal, 1731, 1806
-recovered snap_scaffold_605-snap.1-T1, internal, 2373, 2529
-recovered snap_scaffold_605-snap.1-T1, internal, 2606, 2747
-recovered snap_scaffold_605-snap.1-T1, internal, 2829, 2972
-recovered snap_scaffold_605-snap.1-T1, internal, 3542, 3727
-recovered snap_scaffold_605-snap.1-T1, internal, 4038, 4215
Couldn't classify 4559, 4640
Sorry, prediction GeneMark_model.108023_t fails validation.
(ATG)	 CC	2340-2372	GT	AGG
(ACC)	 AG	2393-2529	GT	AAG
(GGT)	 AG	2570-2747	GT	TGG
(GTT)	 AG	2829-2972	GT	AGG
(AGA)	 AG	3187-3195	GT	CTG
(GTC)	 AG	3542-3727	GT	AGG
(AGT)	 AG	4038-4215	GT	AGG
(GCT)	 AG	4559-4640	GT	TGG
-recovered GeneMark_model.108023_t, initial, 2340, 2372
-recovered GeneMark_model.108023_t, internal, 2393, 2529
-recovered GeneMark_model.108023_t, internal, 2570, 2747
-recovered GeneMark_model.108023_t, internal, 2829, 2972
-recovered GeneMark_model.108023_t, internal, 3187, 3195
-recovered GeneMark_model.108023_t, internal, 3542, 3727
-recovered GeneMark_model.108023_t, internal, 4038, 4215
-recovered GeneMark_model.108023_t, internal, 4559, 4640

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_605-snap.3-T1
Valid prediction for snap_scaffold_605-snap.2-T1
Valid prediction for GeneMark_model.108022_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4644, rend_intergenic: 968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5435
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4644, rend_intergenic: 968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support