-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_603

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4911, 5064
Sorry, prediction GeneMark_model.108017_t fails validation.
(ATG)	 CT	4642-4678	GT	AGG
(GCC)	 AG	4723-4802	GT	AGG
(AAG)	 AG	4911-5064	GT	TGG
-recovered GeneMark_model.108017_t, initial, 4642, 4678
-recovered GeneMark_model.108017_t, internal, 4723, 4802
-recovered GeneMark_model.108017_t, internal, 4911, 5064
Valid prediction for GlimmerHMM_glimmerT_62040-T1
Couldn't classify 4911, 5055
Sorry, prediction Augustus_model.g41238.t1 fails validation.
(ATG)	 TC	3664-3682	GT	AGG
(TTG)	 AG	4570-4802	GT	AGG
(AAG)	 AG	4911-5055	GT	AGG
-recovered Augustus_model.g41238.t1, initial, 3664, 3682
-recovered Augustus_model.g41238.t1, internal, 4570, 4802
-recovered Augustus_model.g41238.t1, internal, 4911, 5055
Couldn't classify 5101, 5145
Sorry, prediction snap_scaffold_603-snap.1-T1 fails validation.
(ATG)	 AA	3933-3945	GT	TAG
(TTG)	 AG	4570-5055	GT	AGG
(ACA)	 AG	5101-5145	GT	AGG
-recovered snap_scaffold_603-snap.1-T1, initial, 3933, 3945
-recovered snap_scaffold_603-snap.1-T1, internal, 4570, 5055
-recovered snap_scaffold_603-snap.1-T1, internal, 5101, 5145

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5454
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support