-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_602

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 201
Sorry, prediction GeneMark_model.108015_t fails validation.
(ACG)	 AG	133-201	GT	GGG
(GGC)	 AG	452-475	GT	TCG
(GGG)	 AG	3313-3349	CC	AGC
-recovered GeneMark_model.108015_t, terminal, 3313, 3349
-recovered GeneMark_model.108015_t, internal, 133, 201
-recovered GeneMark_model.108015_t, internal, 452, 475
Couldn't classify 59, 173
Couldn't classify 5296, 5360
Sorry, prediction snap_scaffold_602-snap.1-T1 fails validation.
(CAC)	 AG	59-173	GT	GGG
(AGG)	 AG	1065-1252	GT	CAG
(ATG)	 AG	5296-5360	GT	ACG
add_exon() Sorry, snap_scaffold_602-snap.1-T1 5296-5360-initial-1 is invalid.
-recovered snap_scaffold_602-snap.1-T1, initial, 5296, 5360
-recovered snap_scaffold_602-snap.1-T1, internal, 59, 173
-recovered snap_scaffold_602-snap.1-T1, internal, 1065, 1252
-recovered snap_scaffold_602-snap.1-T1, internal, 5296, 5360

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 195, 296
Sorry, prediction GeneMark_model.108016_t fails validation.
(AGC)	 AG	195-296	GT	ACG
(ACA)	 AG	321-338	GT	GTG
(AGG)	 AG	626-637	GT	AGG
(AGG)	 AG	664-772	CC	AGC
-recovered GeneMark_model.108016_t, terminal, 664, 772
-recovered GeneMark_model.108016_t, internal, 195, 296
-recovered GeneMark_model.108016_t, internal, 321, 338
-recovered GeneMark_model.108016_t, internal, 626, 637

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5462
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support