-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_601

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 39, 155
Sorry, prediction GeneMark_model.108012_t fails validation.
(GAG)	 AG	39-155	GT	GAG
(GAC)	 AG	178-198	GT	GAG
(GTC)	 AG	257-263	AG	AGA
-recovered GeneMark_model.108012_t, terminal, 257, 263
-recovered GeneMark_model.108012_t, internal, 39, 155
-recovered GeneMark_model.108012_t, internal, 178, 198
Couldn't classify 32, 221
Sorry, prediction snap_scaffold_601-snap.1-T1 fails validation.
(AGG)	 AG	32-221	GT	ATG
(CTG)	 AG	1182-1187	CG	AGC
-recovered snap_scaffold_601-snap.1-T1, terminal, 1182, 1187
-recovered snap_scaffold_601-snap.1-T1, internal, 32, 221
Valid prediction for GeneMark_model.108014_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4425, 4936
Sorry, prediction snap_scaffold_601-snap.2-T1 fails validation.
(ATG)	 AG	4366-4407	GT	CGG
(GTG)	 AG	4425-4936	GT	CGG
-recovered snap_scaffold_601-snap.2-T1, initial, 4366, 4407
-recovered snap_scaffold_601-snap.2-T1, internal, 4366, 4407
-recovered snap_scaffold_601-snap.2-T1, internal, 4425, 4936
Valid prediction for snap_scaffold_601-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_62038-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.108013_t
Couldn't classify 716, 855
Sorry, prediction GlimmerHMM_glimmerT_62039-T1 fails validation.
(AGA)	 AG	716-855	GT	CAG
(AAT)	 AG	2282-2351	GT	AGG
-recovered GlimmerHMM_glimmerT_62039-T1, terminal, 2282, 2351
-recovered GlimmerHMM_glimmerT_62039-T1, internal, 716, 855
-recovered GlimmerHMM_glimmerT_62039-T1, internal, 2282, 2351

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1187, rend_intergenic: 551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5486
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1187, rend_intergenic: 551  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support