-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_600

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3889, 4002
Sorry, prediction GlimmerHMM_glimmerT_62037-T1 fails validation.
(ATG)	 CT	947-1021	GT	ATG
(AAC)	 AG	3889-4002	GT	CAG
-recovered GlimmerHMM_glimmerT_62037-T1, initial, 947, 1021
-recovered GlimmerHMM_glimmerT_62037-T1, internal, 3889, 4002
Valid prediction for snap_scaffold_600-snap.1-T1
add_exon() Sorry, snap_scaffold_600-snap.1-T1 891-1072-terminal-1 is invalid.
Valid prediction for GeneMark_model.108011_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 122, 238
Couldn't classify 1448, 1612
Sorry, prediction snap_scaffold_600-snap.2-T1 fails validation.
(GCG)	 AG	122-238	GT	GAG
(CTC)	 AG	1448-1612	GT	TGG
-recovered snap_scaffold_600-snap.2-T1, internal, 122, 238
-recovered snap_scaffold_600-snap.2-T1, internal, 1448, 1612

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5497
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support