-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_8294184-8531113

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.26091_t
Couldn't classify 231126, 231151
Couldn't classify 232159, 232176
Sorry, prediction pasa_asmbl_47078.p1 fails validation.
(GCG)	 TG	231126-231151	GT	ACG
(TGG)	 AG	231447-231480	GT	AGG
(GAA)	 AG	231583-231853	GT	GGG
(CTC)	 AG	231974-232047	GT	GAG
(CTA)	 AG	232159-232176	AA	CCA
-recovered pasa_asmbl_47078.p1, internal, 231447, 231480
-recovered pasa_asmbl_47078.p1, internal, 231583, 231853
-recovered pasa_asmbl_47078.p1, internal, 231974, 232047
Valid prediction for Augustus_model.g10306.t1
Valid prediction for HiQ_model.g10311.t1
Valid prediction for GlimmerHMM_glimmerT_15444-T1
Valid prediction for HiQ_model.g10320.t1
Valid prediction for GlimmerHMM_glimmerT_15463-T1
Valid prediction for GeneMark_model.26057_t
Valid prediction for CodingQuarry_transcript_54985-T1
Valid prediction for GeneMark_model.26062_t
Valid prediction for snap_scaffold_6-snap.1864-T1
Valid prediction for CodingQuarry_transcript_54988-T1
Valid prediction for GeneMark_model.26074_t
Valid prediction for snap_scaffold_6-snap.1863-T1
Valid prediction for snap_scaffold_6-snap.1886-T1
Valid prediction for Augustus_model.g10305.t1
Couldn't classify 232358, 232434
Sorry, prediction pasa_asmbl_47079.p1 fails validation.
(CTA)	 TA	232358-232434	GT	AGG
(GGA)	 AG	232543-232593	GT	AGG
(GTT)	 AG	232688-232759	GT	AGG
(ACG)	 AG	232897-233044	GT	TGG
(ATG)	 AG	233134-233221	GT	GGG
(CGT)	 AG	233310-233392	TC	AAT
-recovered pasa_asmbl_47079.p1, initial, 233134, 233221
-recovered pasa_asmbl_47079.p1, terminal, 233310, 233392
-recovered pasa_asmbl_47079.p1, internal, 232543, 232593
-recovered pasa_asmbl_47079.p1, internal, 232688, 232759
-recovered pasa_asmbl_47079.p1, internal, 232897, 233044
-recovered pasa_asmbl_47079.p1, internal, 233134, 233221
Valid prediction for Augustus_model.g10304.t1
Valid prediction for GeneMark_model.26080_t
Valid prediction for GeneMark_model.26087_t
Valid prediction for GeneMark_model.26068_t
Valid prediction for Augustus_model.g10314.t1
Valid prediction for GeneMark_model.26045_t
Valid prediction for snap_scaffold_6-snap.1860-T1
Valid prediction for snap_scaffold_6-snap.1872-T1
Valid prediction for CodingQuarry_transcript_54992-T1
Valid prediction for snap_scaffold_6-snap.1892-T1
Valid prediction for snap_scaffold_6-snap.1884-T1
Valid prediction for GeneMark_model.26051_t
Valid prediction for GeneMark_model.26035_t
Valid prediction for GlimmerHMM_glimmerT_15478-T1
Valid prediction for GlimmerHMM_glimmerT_15443-T1
Valid prediction for CodingQuarry_transcript_54989-T1
Valid prediction for GeneMark_model.26090_t
Valid prediction for Augustus_model.g10307.t1
Valid prediction for GeneMark_model.26085_t
Valid prediction for GeneMark_model.26047_t
Valid prediction for snap_scaffold_6-snap.1858-T1
Valid prediction for snap_scaffold_6-snap.1852-T1
Valid prediction for HiQ_model.g10309.t1
Valid prediction for snap_scaffold_6-snap.1887-T1
Valid prediction for GlimmerHMM_glimmerT_15470-T1
Valid prediction for snap_scaffold_6-snap.1856-T1
Valid prediction for GlimmerHMM_glimmerT_15479-T1
Valid prediction for GeneMark_model.26079_t
Valid prediction for GeneMark_model.26044_t
Valid prediction for Augustus_model.g10321.t1
Couldn't classify 10058, 10080
Couldn't classify 11364, 11400
Sorry, prediction pasa_asmbl_47055.p1 fails validation.
(CCT)	 AC	10058-10080	GT	AGG
(TGA)	 AG	10337-10471	GT	AGG
(GGG)	 AG	10997-11032	GT	AGG
(CCC)	 AG	11121-11204	GT	GGG
(TGG)	 AG	11364-11400	GG	GTG
-recovered pasa_asmbl_47055.p1, internal, 10337, 10471
-recovered pasa_asmbl_47055.p1, internal, 10997, 11032
-recovered pasa_asmbl_47055.p1, internal, 11121, 11204
Valid prediction for GeneMark_model.26070_t
Valid prediction for pasa_asmbl_47070.p1
Valid prediction for GeneMark_model.26078_t
Valid prediction for Augustus_model.g10303.t1
Couldn't classify 202556, 202705
Couldn't classify 203038, 203214
Sorry, prediction pasa_asmbl_47072.p2 fails validation.
(TCC)	 AC	202556-202705	GT	AGG
(TGT)	 AG	203038-203214	GT	AGG
-recovered pasa_asmbl_47072.p2, internal, 203038, 203214
Valid prediction for GeneMark_model.26066_t
Valid prediction for GlimmerHMM_glimmerT_15458-T1
Valid prediction for GlimmerHMM_glimmerT_15459-T1
Valid prediction for CodingQuarry_transcript_54984-T1
Valid prediction for Augustus_model.g10310.t1
Valid prediction for Augustus_model.g10315.t1
Valid prediction for GeneMark_model.26055_t
Valid prediction for snap_scaffold_6-snap.1874-T1
Valid prediction for GlimmerHMM_glimmerT_15457-T1
Valid prediction for GeneMark_model.26038_t
Valid prediction for snap_scaffold_6-snap.1865-T1
Valid prediction for snap_scaffold_6-snap.1854-T1
Valid prediction for GeneMark_model.26042_t
Valid prediction for GeneMark_model.26096_t
Valid prediction for snap_scaffold_6-snap.1889-T1
Couldn't classify 204992, 205061
Sorry, prediction pasa_asmbl_47074.p1 fails validation.
(TAT)	 GT	204992-205061	GT	AGG
(TCT)	 AG	205350-206023	TG	AGT
-recovered pasa_asmbl_47074.p1, terminal, 205350, 206023
Valid prediction for GlimmerHMM_glimmerT_15442-T1
Valid prediction for GlimmerHMM_glimmerT_15466-T1
Valid prediction for Augustus_model.g10316.t1
Valid prediction for GeneMark_model.26049_t
Valid prediction for snap_scaffold_6-snap.1876-T1
Valid prediction for GlimmerHMM_glimmerT_15473-T1
Valid prediction for GlimmerHMM_glimmerT_15456-T1
Valid prediction for GlimmerHMM_glimmerT_15465-T1
Valid prediction for snap_scaffold_6-snap.1848-T1
Valid prediction for GeneMark_model.26093_t
Valid prediction for snap_scaffold_6-snap.1842-T1
Valid prediction for snap_scaffold_6-snap.1868-T1
Valid prediction for snap_scaffold_6-snap.1891-T1
Valid prediction for GeneMark_model.26052_t
Valid prediction for Augustus_model.g10295.t1
Couldn't classify 203413, 203448
Couldn't classify 203903, 204233
Sorry, prediction pasa_asmbl_47073.p1 fails validation.
(GAC)	 AC	203413-203448	GT	AGG
(CTT)	 AG	203610-203812	GT	CGG
(GGT)	 AG	203903-204233	GA	TGG
-recovered pasa_asmbl_47073.p1, internal, 203610, 203812
Valid prediction for Augustus_model.g10318.t1
Valid prediction for snap_scaffold_6-snap.1846-T1
Valid prediction for GlimmerHMM_glimmerT_15475-T1
Valid prediction for GeneMark_model.26088_t
Valid prediction for GlimmerHMM_glimmerT_15462-T1
Valid prediction for snap_scaffold_6-snap.1844-T1
Valid prediction for GeneMark_model.26071_t
Valid prediction for GeneMark_model.26036_t
Valid prediction for snap_scaffold_6-snap.1870-T1
Valid prediction for GlimmerHMM_glimmerT_15455-T1
Valid prediction for snap_scaffold_6-snap.1878-T1
Valid prediction for GeneMark_model.26098_t
Valid prediction for GeneMark_model.26076_t
Valid prediction for pasa_asmbl_47069.p1
Valid prediction for snap_scaffold_6-snap.1879-T1
Couldn't classify 223730, 223795
Sorry, prediction pasa_asmbl_47076.p1 fails validation.
(CTG)	 CT	223730-223795	GT	AGG
(GAT)	 AG	224014-224277	GT	AGG
(GTG)	 AG	224522-224677	GT	AGG
(GTT)	 AG	224776-224845	GT	AGG
(GAC)	 AG	224939-225045	GT	AGG
(GAG)	 AG	225132-225261	GT	ACG
(CTT)	 AG	225379-225434	GT	AGG
(GGC)	 AG	225557-225683	GT	AGG
(GTA)	 AG	225808-225945	GT	CTG
(ACG)	 AG	226044-226164	GT	AAG
(GGA)	 AG	226301-226458	GT	AGG
(ATG)	 AG	226616-226791	GT	TGG
(TTC)	 AG	226877-226987	GT	AGG
(GTG)	 AG	227293-227418	GT	ATG
(GTG)	 AG	227588-227696	GT	GGG
(GAG)	 AG	227807-228000	GT	AGG
(GAG)	 AG	228108-228204	GT	TGG
(GTG)	 AG	228578-228762	GT	AGG
(GAG)	 AG	228875-228989	GT	CAG
(TCT)	 AG	229093-229289	GT	AGG
(CCC)	 AG	229444-229586	GT	AGG
(GGA)	 AG	229687-229798	GT	AGG
(GGC)	 AG	229886-230029	GT	AGG
(TTC)	 AG	230139-230249	AC	GAA
add_exon() Sorry, pasa_asmbl_47076.p1 226616-226791-initial-1 is invalid.
-recovered pasa_asmbl_47076.p1, initial, 226616, 226791
-recovered pasa_asmbl_47076.p1, terminal, 224776, 224845
-recovered pasa_asmbl_47076.p1, terminal, 230139, 230249
-recovered pasa_asmbl_47076.p1, internal, 224014, 224277
-recovered pasa_asmbl_47076.p1, internal, 224522, 224677
-recovered pasa_asmbl_47076.p1, internal, 224776, 224845
-recovered pasa_asmbl_47076.p1, internal, 224939, 225045
-recovered pasa_asmbl_47076.p1, internal, 225132, 225261
-recovered pasa_asmbl_47076.p1, internal, 225379, 225434
-recovered pasa_asmbl_47076.p1, internal, 225557, 225683
-recovered pasa_asmbl_47076.p1, internal, 225808, 225945
-recovered pasa_asmbl_47076.p1, internal, 226044, 226164
-recovered pasa_asmbl_47076.p1, internal, 226301, 226458
-recovered pasa_asmbl_47076.p1, internal, 226616, 226791
-recovered pasa_asmbl_47076.p1, internal, 226877, 226987
-recovered pasa_asmbl_47076.p1, internal, 227293, 227418
-recovered pasa_asmbl_47076.p1, internal, 227588, 227696
-recovered pasa_asmbl_47076.p1, internal, 227807, 228000
-recovered pasa_asmbl_47076.p1, internal, 228108, 228204
-recovered pasa_asmbl_47076.p1, internal, 228578, 228762
-recovered pasa_asmbl_47076.p1, internal, 228875, 228989
-recovered pasa_asmbl_47076.p1, internal, 229093, 229289
-recovered pasa_asmbl_47076.p1, internal, 229444, 229586
-recovered pasa_asmbl_47076.p1, internal, 229687, 229798
-recovered pasa_asmbl_47076.p1, internal, 229886, 230029
Valid prediction for GlimmerHMM_glimmerT_15472-T1
Couldn't classify 168605, 168751
Sorry, prediction pasa_asmbl_47066.p1 fails validation.
(TTT)	 CC	168605-168751	GT	CCG
(GTG)	 AG	168888-169097	GT	AGG
(GTG)	 AG	169168-169294	GT	TGG
(GTG)	 AG	169370-169507	GT	AGG
(GTG)	 AG	169653-169817	GT	AGG
(GCG)	 AG	169914-170060	GT	AGG
(GTA)	 AG	170164-170321	AA	GAA
-recovered pasa_asmbl_47066.p1, terminal, 170164, 170321
-recovered pasa_asmbl_47066.p1, internal, 168888, 169097
-recovered pasa_asmbl_47066.p1, internal, 169168, 169294
-recovered pasa_asmbl_47066.p1, internal, 169370, 169507
-recovered pasa_asmbl_47066.p1, internal, 169653, 169817
-recovered pasa_asmbl_47066.p1, internal, 169914, 170060
Valid prediction for GlimmerHMM_glimmerT_15476-T1
Valid prediction for GeneMark_model.26039_t
Valid prediction for GeneMark_model.26083_t
Valid prediction for snap_scaffold_6-snap.1880-T1
Valid prediction for snap_scaffold_6-snap.1885-T1
Valid prediction for GeneMark_model.26054_t
Valid prediction for GeneMark_model.26094_t
Valid prediction for GlimmerHMM_glimmerT_15471-T1
Valid prediction for GeneMark_model.26064_t
Couldn't classify 200652, 200693
Couldn't classify 201939, 202023
Sorry, prediction pasa_asmbl_47071.p1 fails validation.
(AGG)	 GC	200652-200693	GT	TGG
(AAC)	 AG	200786-200947	GT	AGG
(TTG)	 AG	201082-201219	GT	AGG
(GCC)	 AG	201511-201701	GT	AGG
(GTC)	 AG	201939-202023	AA	CCA
-recovered pasa_asmbl_47071.p1, internal, 200786, 200947
-recovered pasa_asmbl_47071.p1, internal, 201082, 201219
-recovered pasa_asmbl_47071.p1, internal, 201511, 201701
Valid prediction for GeneMark_model.26073_t
Valid prediction for GlimmerHMM_glimmerT_15450-T1
Valid prediction for GlimmerHMM_glimmerT_15464-T1
Valid prediction for snap_scaffold_6-snap.1850-T1
Valid prediction for snap_scaffold_6-snap.1866-T1
Valid prediction for GlimmerHMM_glimmerT_15453-T1
Valid prediction for GeneMark_model.26059_t
Valid prediction for GlimmerHMM_glimmerT_15454-T1
Valid prediction for pasa_asmbl_47059.p1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.1851-T1
Valid prediction for Augustus_model.g10299.t1
Valid prediction for snap_scaffold_6-snap.1882-T1
Valid prediction for GeneMark_model.26081_t
Valid prediction for GeneMark_model.26067_t
Valid prediction for snap_scaffold_6-snap.1871-T1
Valid prediction for GlimmerHMM_glimmerT_15446-T1
Valid prediction for GeneMark_model.26084_t
Valid prediction for GeneMark_model.26086_t
Valid prediction for snap_scaffold_6-snap.1877-T1
Valid prediction for GeneMark_model.26056_t
Valid prediction for GeneMark_model.26040_t
Valid prediction for GeneMark_model.26077_t
Valid prediction for snap_scaffold_6-snap.1883-T1
Valid prediction for GlimmerHMM_glimmerT_15451-T1
Valid prediction for GeneMark_model.26075_t
Valid prediction for GlimmerHMM_glimmerT_15445-T1
Valid prediction for snap_scaffold_6-snap.1859-T1
Valid prediction for Augustus_model.g10296.t1
Valid prediction for snap_scaffold_6-snap.1890-T1
Valid prediction for Augustus_model.g10298.t1
Couldn't classify 14349, 14350
Sorry, prediction pasa_asmbl_48498.p1 fails validation.
(ATG)	 AC	14349-14350	GT	ATG
(GCA)	 AG	14532-14672	GT	CAG
(CCC)	 AG	14820-14971	GT	CGG
(CAG)	 AG	15120-15148	GA	AGG
-recovered pasa_asmbl_48498.p1, terminal, 15120, 15148
-recovered pasa_asmbl_48498.p1, internal, 14532, 14672
-recovered pasa_asmbl_48498.p1, internal, 14820, 14971
Valid prediction for GeneMark_model.26053_t
Valid prediction for GeneMark_model.26034_t
Valid prediction for Augustus_model.g10301.t1
Valid prediction for Augustus_model.g10308.t1
Valid prediction for pasa_asmbl_48496.p1
Valid prediction for GlimmerHMM_glimmerT_15460-T1
Valid prediction for GlimmerHMM_glimmerT_15467-T1
Valid prediction for snap_scaffold_6-snap.1847-T1
Valid prediction for GeneMark_model.26097_t
Valid prediction for GlimmerHMM_glimmerT_15468-T1
Valid prediction for Augustus_model.g10317.t1
Valid prediction for GlimmerHMM_glimmerT_15474-T1
Valid prediction for GeneMark_model.26069_t
Valid prediction for GlimmerHMM_glimmerT_15448-T1
Valid prediction for snap_scaffold_6-snap.1849-T1
Valid prediction for HiQ_model.g10319.t1
Valid prediction for GeneMark_model.26072_t
Valid prediction for GlimmerHMM_glimmerT_15461-T1
Valid prediction for Augustus_model.g10297.t1
Valid prediction for GeneMark_model.26061_t
Valid prediction for GeneMark_model.26092_t
Valid prediction for GeneMark_model.26046_t
Valid prediction for CodingQuarry_transcript_54987-T1
Valid prediction for snap_scaffold_6-snap.1869-T1
Valid prediction for GeneMark_model.26037_t
Valid prediction for snap_scaffold_6-snap.1875-T1
Valid prediction for pasa_asmbl_48489.p1
Valid prediction for snap_scaffold_6-snap.1843-T1
Valid prediction for snap_scaffold_6-snap.1888-T1
Valid prediction for GlimmerHMM_glimmerT_15441-T1
Valid prediction for CodingQuarry_transcript_54986-T1
Couldn't classify 58550, 58908
Sorry, prediction pasa_asmbl_48495.p1 fails validation.
(ATG)	 AA	57806-58082	GT	GGG
(ACG)	 AG	58160-58278	GT	AGG
(GCA)	 AG	58359-58467	GT	AGG
(GGT)	 AG	58550-58908	GA	GAG
-recovered pasa_asmbl_48495.p1, initial, 57806, 58082
-recovered pasa_asmbl_48495.p1, internal, 58160, 58278
-recovered pasa_asmbl_48495.p1, internal, 58359, 58467
Valid prediction for snap_scaffold_6-snap.1857-T1
Valid prediction for snap_scaffold_6-snap.1855-T1
Valid prediction for snap_scaffold_6-snap.1853-T1
Valid prediction for GeneMark_model.26089_t
Valid prediction for Augustus_model.g10313.t1
Valid prediction for GlimmerHMM_glimmerT_15452-T1
Valid prediction for Augustus_model.g10312.t1
Valid prediction for snap_scaffold_6-snap.1873-T1
Valid prediction for GlimmerHMM_glimmerT_15449-T1
Valid prediction for GlimmerHMM_glimmerT_15477-T1
Valid prediction for GeneMark_model.26060_t
Valid prediction for snap_scaffold_6-snap.1862-T1
Valid prediction for Augustus_model.g10302.t1
Valid prediction for GlimmerHMM_glimmerT_15469-T1
Valid prediction for Augustus_model.g10300.t1
Valid prediction for GeneMark_model.26095_t
Valid prediction for GeneMark_model.26082_t
Valid prediction for snap_scaffold_6-snap.1861-T1
Valid prediction for snap_scaffold_6-snap.1845-T1
Valid prediction for GeneMark_model.26058_t
Valid prediction for GeneMark_model.26050_t
Valid prediction for GeneMark_model.26048_t
Couldn't classify 14349, 14350
Sorry, prediction CodingQuarry_transcript_54991-T1 fails validation.
(ATG)	 AC	14349-14350	GT	ATG
(GCA)	 AG	14532-14672	GT	CAG
(CCC)	 AG	14820-14971	GT	CGG
(CAG)	 AG	15120-15148	GA	AGG
-recovered CodingQuarry_transcript_54991-T1, terminal, 15120, 15148
-recovered CodingQuarry_transcript_54991-T1, internal, 14532, 14672
-recovered CodingQuarry_transcript_54991-T1, internal, 14820, 14971
Valid prediction for snap_scaffold_6-snap.1867-T1
Valid prediction for snap_scaffold_6-snap.1881-T1
Valid prediction for GlimmerHMM_glimmerT_15447-T1
Valid prediction for GeneMark_model.26063_t
Valid prediction for GeneMark_model.26041_t
Valid prediction for GeneMark_model.26065_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7150, rend_intergenic: 5267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28475, rend_intergenic: 26556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38339, rend_intergenic: 35885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43647, rend_intergenic: 40448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51452, rend_intergenic: 47888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58739, rend_intergenic: 54739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65929, rend_intergenic: 58922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75110, rend_intergenic: 66657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78904, rend_intergenic: 75561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84638, rend_intergenic: 80517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85027, rend_intergenic: 84726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89671, rend_intergenic: 85658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94871, rend_intergenic: 90637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120441, rend_intergenic: 119620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121770, rend_intergenic: 121289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124462, rend_intergenic: 123263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125853, rend_intergenic: 124682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130207, rend_intergenic: 127639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137190, rend_intergenic: 134423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137825, rend_intergenic: 137224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142808, rend_intergenic: 138475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 236930
-exon list size: 971


building trellis

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13.9    
14.0    
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14.7    
14.8    
14.9    
15.0    
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15.8    
15.9    
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16.8    
16.9    
17.0    
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17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
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19.2    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.8    
21.9    
22.0    
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22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.2    
24.3    
24.4    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
26.9    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.6    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.8    
34.9    
35.0    
35.1    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.5    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.5    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 53 predictions from path traversal
Error with prediction: snap lend_intergenic: 7150, rend_intergenic: 5267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28475, rend_intergenic: 26556  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38339, rend_intergenic: 35885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43647, rend_intergenic: 40448  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51452, rend_intergenic: 47888  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58739, rend_intergenic: 54739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65929, rend_intergenic: 58922  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75110, rend_intergenic: 66657  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78904, rend_intergenic: 75561  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84638, rend_intergenic: 80517  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85027, rend_intergenic: 84726  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 89671, rend_intergenic: 85658  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94871, rend_intergenic: 90637  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120441, rend_intergenic: 119620  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121770, rend_intergenic: 121289  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124462, rend_intergenic: 123263  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125853, rend_intergenic: 124682  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130207, rend_intergenic: 127639  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137190, rend_intergenic: 134423  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 137825, rend_intergenic: 137224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142808, rend_intergenic: 138475  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 29 predictions persist after filtering for low support