-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_628996-883838 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.178-T1 Valid prediction for GlimmerHMM_glimmerT_14278-T1 Valid prediction for snap_scaffold_6-snap.157-T1 Valid prediction for GlimmerHMM_glimmerT_14291-T1 Valid prediction for GeneMark_model.23912_t Couldn't classify 15950, 16024 Couldn't classify 18176, 18298 Sorry, prediction pasa_asmbl_46623.p1 fails validation. (GAC) CA 15950-16024 GT ACG (GAT) AG 16142-16190 GT CTG (CAT) AG 16386-16513 GT AGG (GTG) AG 16742-16824 GT GGG (GAA) AG 17049-17088 GT TAG (GTG) AG 17338-17454 GT AGG (GTG) AG 18176-18298 GT AGG -recovered pasa_asmbl_46623.p1, internal, 16142, 16190 -recovered pasa_asmbl_46623.p1, internal, 16386, 16513 -recovered pasa_asmbl_46623.p1, internal, 16742, 16824 -recovered pasa_asmbl_46623.p1, internal, 17049, 17088 -recovered pasa_asmbl_46623.p1, internal, 17338, 17454 -recovered pasa_asmbl_46623.p1, internal, 18176, 18298 Valid prediction for GlimmerHMM_glimmerT_14273-T1 Valid prediction for GeneMark_model.23861_t Valid prediction for GeneMark_model.23932_t Valid prediction for GlimmerHMM_glimmerT_14269-T1 Valid prediction for GeneMark_model.23871_t Valid prediction for GeneMark_model.23905_t Valid prediction for GeneMark_model.23874_t Valid prediction for GeneMark_model.23927_t Valid prediction for GeneMark_model.23901_t Valid prediction for CodingQuarry_transcript_54761-T1 Valid prediction for snap_scaffold_6-snap.159-T1 Valid prediction for GlimmerHMM_glimmerT_14289-T1 Valid prediction for snap_scaffold_6-snap.177-T1 Couldn't classify 83101, 83169 Sorry, prediction pasa_asmbl_46625.p1 fails validation. (CTG) TG 83101-83169 GT TGG (GAT) AG 83292-83438 GT AGG (GTG) AG 83734-83892 AC GAA -recovered pasa_asmbl_46625.p1, terminal, 83734, 83892 -recovered pasa_asmbl_46625.p1, internal, 83292, 83438 Valid prediction for snap_scaffold_6-snap.185-T1 Valid prediction for GeneMark_model.23878_t Valid prediction for GeneMark_model.23858_t Valid prediction for GlimmerHMM_glimmerT_14300-T1 Valid prediction for GeneMark_model.23919_t Valid prediction for snap_scaffold_6-snap.164-T1 Valid prediction for snap_scaffold_6-snap.158-T1 Valid prediction for GeneMark_model.23893_t Valid prediction for GeneMark_model.23887_t Valid prediction for GeneMark_model.23883_t Couldn't classify 233932, 234014 Couldn't classify 240419, 240462 Sorry, prediction pasa_asmbl_47838.p1 fails validation. (AGA) AC 233932-234014 GT GGG (CCC) AG 234338-234413 GT TGG (GTG) AG 235345-235443 GT AGG (TAC) AG 236571-236694 GT AGG (GCA) AG 237734-237834 GT AGG (ATG) AG 238220-238300 GT AAG (GAC) AG 238651-238779 GT AGG (GAT) AG 239210-239291 GT AGG (CTG) AG 239627-239737 GT AGG (GAA) AG 239982-240137 GT AGG (GGT) AG 240419-240462 GA ACG -recovered pasa_asmbl_47838.p1, initial, 238220, 238300 add_exon() Sorry, pasa_asmbl_47838.p1 239210-239291-terminal-3 is invalid. -recovered pasa_asmbl_47838.p1, terminal, 239210, 239291 add_exon() Sorry, pasa_asmbl_47838.p1 239982-240137-terminal-1 is invalid. -recovered pasa_asmbl_47838.p1, terminal, 239982, 240137 -recovered pasa_asmbl_47838.p1, internal, 234338, 234413 -recovered pasa_asmbl_47838.p1, internal, 235345, 235443 -recovered pasa_asmbl_47838.p1, internal, 236571, 236694 -recovered pasa_asmbl_47838.p1, internal, 237734, 237834 -recovered pasa_asmbl_47838.p1, internal, 238220, 238300 -recovered pasa_asmbl_47838.p1, internal, 238651, 238779 -recovered pasa_asmbl_47838.p1, internal, 239210, 239291 -recovered pasa_asmbl_47838.p1, internal, 239627, 239737 -recovered pasa_asmbl_47838.p1, internal, 239982, 240137 Valid prediction for GeneMark_model.23922_t Valid prediction for snap_scaffold_6-snap.143-T1 Valid prediction for snap_scaffold_6-snap.183-T1 Valid prediction for GeneMark_model.23916_t Valid prediction for GlimmerHMM_glimmerT_14290-T1 Valid prediction for GeneMark_model.23865_t Valid prediction for GeneMark_model.23921_t Valid prediction for snap_scaffold_6-snap.169-T1 Valid prediction for snap_scaffold_6-snap.196-T1 Valid prediction for Augustus_model.g9544.t1 Valid prediction for snap_scaffold_6-snap.152-T1 Valid prediction for GeneMark_model.23929_t Valid prediction for GeneMark_model.23848_t Valid prediction for GeneMark_model.23908_t Valid prediction for snap_scaffold_6-snap.171-T1 Valid prediction for GlimmerHMM_glimmerT_14288-T1 Valid prediction for snap_scaffold_6-snap.149-T1 Valid prediction for snap_scaffold_6-snap.161-T1 Valid prediction for GeneMark_model.23899_t Valid prediction for snap_scaffold_6-snap.141-T1 Valid prediction for GlimmerHMM_glimmerT_14276-T1 Valid prediction for GlimmerHMM_glimmerT_14271-T1 Valid prediction for Augustus_model.g9532.t1 Valid prediction for GeneMark_model.23885_t Valid prediction for GeneMark_model.23852_t Valid prediction for GeneMark_model.23897_t Valid prediction for snap_scaffold_6-snap.191-T1 Valid prediction for GeneMark_model.23868_t Valid prediction for snap_scaffold_6-snap.199-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.23891_t Valid prediction for Augustus_model.g9533.t1 Valid prediction for snap_scaffold_6-snap.145-T1 Valid prediction for snap_scaffold_6-snap.179-T1 Valid prediction for GeneMark_model.23894_t Valid prediction for GeneMark_model.23864_t Valid prediction for GeneMark_model.23870_t Valid prediction for snap_scaffold_6-snap.184-T1 Valid prediction for GeneMark_model.23903_t Valid prediction for snap_scaffold_6-snap.147-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_6-snap.174-T1 Valid prediction for GeneMark_model.23907_t Valid prediction for snap_scaffold_6-snap.187-T1 Valid prediction for GlimmerHMM_glimmerT_14294-T1 Valid prediction for GlimmerHMM_glimmerT_14284-T1 Couldn't classify 169522, 169561 Couldn't classify 169954, 170882 Sorry, prediction pasa_asmbl_46627.p1 fails validation. (GGG) CG 169522-169561 GT GGG (GTG) AG 169954-170882 AC TGA Valid prediction for snap_scaffold_6-snap.154-T1 Valid prediction for Augustus_model.g9537.t1 Valid prediction for Augustus_model.g9552.t1 Couldn't classify 215550, 216230 Sorry, prediction pasa_asmbl_46634.p1 fails validation. (GGG) GA 215550-216230 CC GAC Valid prediction for Augustus_model.g9547.t1 Valid prediction for snap_scaffold_6-snap.170-T1 Valid prediction for GeneMark_model.23873_t Valid prediction for GeneMark_model.23862_t Valid prediction for Augustus_model.g9543.t1 Valid prediction for snap_scaffold_6-snap.167-T1 Valid prediction for GlimmerHMM_glimmerT_14282-T1 Valid prediction for GeneMark_model.23890_t Valid prediction for Augustus_model.g9548.t1 Couldn't classify 212222, 212490 Couldn't classify 214830, 214944 Sorry, prediction pasa_asmbl_46633.p1 fails validation. (ACT) TG 212222-212490 GT CGG (ACT) AG 214830-214944 AA GGA Valid prediction for GlimmerHMM_glimmerT_14275-T1 Valid prediction for GeneMark_model.23925_t Couldn't classify 20422, 20525 Couldn't classify 22183, 22195 Sorry, prediction CodingQuarry_transcript_54760-T1 fails validation. (ATG) AT 20422-20525 AG GTA (TGT) TG 22183-22195 AA AGA Valid prediction for GeneMark_model.23914_t Valid prediction for GeneMark_model.23910_t Valid prediction for GlimmerHMM_glimmerT_14272-T1 Valid prediction for snap_scaffold_6-snap.148-T1 Valid prediction for GeneMark_model.23876_t Valid prediction for GlimmerHMM_glimmerT_14292-T1 Valid prediction for GeneMark_model.23896_t Valid prediction for GeneMark_model.23854_t Valid prediction for snap_scaffold_6-snap.160-T1 Valid prediction for GeneMark_model.23850_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14281-T1 Valid prediction for Augustus_model.g9551.t1 Valid prediction for snap_scaffold_6-snap.189-T1 Valid prediction for GeneMark_model.23911_t Valid prediction for snap_scaffold_6-snap.198-T1 Valid prediction for GeneMark_model.23900_t Valid prediction for GlimmerHMM_glimmerT_14279-T1 Valid prediction for GlimmerHMM_glimmerT_14297-T1 Valid prediction for Augustus_model.g9540.t1 Valid prediction for GeneMark_model.23882_t Valid prediction for GeneMark_model.23892_t Valid prediction for GeneMark_model.23863_t Valid prediction for snap_scaffold_6-snap.166-T1 Valid prediction for GeneMark_model.23884_t Valid prediction for GlimmerHMM_glimmerT_14295-T1 Valid prediction for GeneMark_model.23855_t Valid prediction for snap_scaffold_6-snap.156-T1 Valid prediction for GeneMark_model.23928_t Valid prediction for GlimmerHMM_glimmerT_14283-T1 Valid prediction for GlimmerHMM_glimmerT_14280-T1 Valid prediction for GeneMark_model.23869_t Valid prediction for snap_scaffold_6-snap.146-T1 Valid prediction for snap_scaffold_6-snap.151-T1 Valid prediction for HiQ_model.g9545.t1 Valid prediction for Augustus_model.g9546.t1 Couldn't classify 8370, 8505 Couldn't classify 8530, 8845 Sorry, prediction CodingQuarry_transcript_54768-T1 fails validation. (ATG) AA 7781-8177 GT AGG (GCA) AG 8370-8505 TA GGT (CAG) AA 8530-8845 AC AGA -recovered CodingQuarry_transcript_54768-T1, initial, 7781, 8177 Valid prediction for GeneMark_model.23872_t Valid prediction for GlimmerHMM_glimmerT_14285-T1 Valid prediction for GlimmerHMM_glimmerT_14270-T1 Valid prediction for GeneMark_model.23920_t Valid prediction for GeneMark_model.23849_t Valid prediction for snap_scaffold_6-snap.194-T1 Valid prediction for Augustus_model.g9542.t1 Couldn't classify 135697, 136986 Sorry, prediction pasa_asmbl_48005.p1 fails validation. (GGA) GA 135697-136986 GC AGG Valid prediction for snap_scaffold_6-snap.197-T1 Valid prediction for GeneMark_model.23933_t Valid prediction for GeneMark_model.23906_t Valid prediction for snap_scaffold_6-snap.180-T1 Valid prediction for GlimmerHMM_glimmerT_14287-T1 Valid prediction for GlimmerHMM_glimmerT_14277-T1 Couldn't classify 150205, 150412 Couldn't classify 150553, 150713 Sorry, prediction pasa_asmbl_47999.p1 fails validation. (CAG) CT 150205-150412 GT TGG (CAT) AG 150553-150713 CT ACC Valid prediction for HiQ_model.g9538.t1 Couldn't classify 25080, 25207 Couldn't classify 26003, 26114 Sorry, prediction pasa_asmbl_48023.p1 fails validation. (CAG) TC 25080-25207 GT AGG (GTG) AG 25356-25750 GT GGG (AAA) AG 25860-25887 GT AGG (TCC) AG 26003-26114 CC CCC -recovered pasa_asmbl_48023.p1, internal, 25356, 25750 -recovered pasa_asmbl_48023.p1, internal, 25860, 25887 Valid prediction for CodingQuarry_transcript_54763-T1 Valid prediction for pasa_asmbl_48029.p1 Valid prediction for snap_scaffold_6-snap.193-T1 Valid prediction for CodingQuarry_transcript_54765-T1 Valid prediction for GeneMark_model.23856_t Valid prediction for Augustus_model.g9534.t1 Valid prediction for pasa_asmbl_48017.p2 Valid prediction for GeneMark_model.23879_t Valid prediction for GeneMark_model.23931_t Valid prediction for snap_scaffold_6-snap.155-T1 Valid prediction for snap_scaffold_6-snap.163-T1 Valid prediction for GlimmerHMM_glimmerT_14296-T1 Valid prediction for snap_scaffold_6-snap.190-T1 Valid prediction for Augustus_model.g9550.t1 Valid prediction for Augustus_model.g9536.t1 Valid prediction for GlimmerHMM_glimmerT_14298-T1 Valid prediction for GeneMark_model.23902_t Valid prediction for snap_scaffold_6-snap.168-T1 Valid prediction for GeneMark_model.23851_t Valid prediction for GeneMark_model.23909_t Valid prediction for snap_scaffold_6-snap.150-T1 Valid prediction for snap_scaffold_6-snap.182-T1 Valid prediction for GeneMark_model.23895_t Valid prediction for CodingQuarry_transcript_54766-T1 Couldn't classify 24272, 24366 Sorry, prediction pasa_asmbl_48024.p1 fails validation. (ATG) TC 22468-22610 GT ATG (AGA) AG 23445-23493 GT TGG (GCG) AG 23777-23918 GT GGG (CTG) AG 24272-24366 AC CCA -recovered pasa_asmbl_48024.p1, initial, 22468, 22610 -recovered pasa_asmbl_48024.p1, internal, 23445, 23493 -recovered pasa_asmbl_48024.p1, internal, 23777, 23918 Valid prediction for snap_scaffold_6-snap.142-T1 Valid prediction for GeneMark_model.23926_t Valid prediction for GeneMark_model.23918_t Valid prediction for snap_scaffold_6-snap.188-T1 Valid prediction for snap_scaffold_6-snap.192-T1 Valid prediction for GlimmerHMM_glimmerT_14286-T1 Valid prediction for Augustus_model.g9539.t1 Valid prediction for snap_scaffold_6-snap.186-T1 Valid prediction for GeneMark_model.23859_t Valid prediction for GeneMark_model.23881_t Couldn't classify 161210, 161456 Sorry, prediction pasa_asmbl_47997.p1 fails validation. (TGC) CA 161210-161456 GT AGG (GTT) AG 161937-162079 GT AGG (ATG) AG 163132-163215 GT AGG (GTT) AG 163603-163818 GT AGG (TAC) AG 164757-164909 GT TGG (GAG) AG 165303-165450 GT AGG (GGG) AG 165640-165704 GT GGG (GTC) AG 165835-165963 GT CTG (ATC) AG 166080-166195 GT AAG (AAT) AG 166561-166658 GT AGG (GTA) AG 166856-166878 GA AGG -recovered pasa_asmbl_47997.p1, initial, 163132, 163215 -recovered pasa_asmbl_47997.p1, terminal, 166856, 166878 -recovered pasa_asmbl_47997.p1, internal, 161937, 162079 -recovered pasa_asmbl_47997.p1, internal, 163132, 163215 -recovered pasa_asmbl_47997.p1, internal, 163603, 163818 -recovered pasa_asmbl_47997.p1, internal, 164757, 164909 -recovered pasa_asmbl_47997.p1, internal, 165303, 165450 -recovered pasa_asmbl_47997.p1, internal, 165640, 165704 -recovered pasa_asmbl_47997.p1, internal, 165835, 165963 -recovered pasa_asmbl_47997.p1, internal, 166080, 166195 -recovered pasa_asmbl_47997.p1, internal, 166561, 166658 Valid prediction for snap_scaffold_6-snap.172-T1 Valid prediction for GeneMark_model.23875_t Valid prediction for snap_scaffold_6-snap.144-T1 Valid prediction for HiQ_model.g9549.t1 Valid prediction for GlimmerHMM_glimmerT_14274-T1 Valid prediction for snap_scaffold_6-snap.181-T1 Valid prediction for GeneMark_model.23877_t Couldn't classify 129681, 129801 Couldn't classify 131969, 132123 Sorry, prediction pasa_asmbl_48008.p1 fails validation. (TGC) CG 129681-129801 GT CTG (ACA) AG 130780-130901 GT AGG (GTG) AG 131193-131277 GT AGG (CTT) AG 131969-132123 GG GGG -recovered pasa_asmbl_48008.p1, internal, 130780, 130901 -recovered pasa_asmbl_48008.p1, internal, 131193, 131277 Valid prediction for GeneMark_model.23888_t Valid prediction for Augustus_model.g9535.t1 Valid prediction for GeneMark_model.23889_t Valid prediction for GeneMark_model.23915_t Valid prediction for GeneMark_model.23860_t Couldn't classify 26541, 26840 Couldn't classify 27247, 27378 Sorry, prediction pasa_asmbl_48022.p1 fails validation. (CCA) CG 26541-26840 GT AGG (GCC) AG 27247-27378 GT AGG -recovered pasa_asmbl_48022.p1, internal, 27247, 27378 Valid prediction for GlimmerHMM_glimmerT_14293-T1 Valid prediction for Augustus_model.g9541.t1 Couldn't classify 6558, 6884 Sorry, prediction pasa_asmbl_48027.p2 fails validation. (CCT) CT 6558-6884 CC AGC Valid prediction for snap_scaffold_6-snap.162-T1 Valid prediction for snap_scaffold_6-snap.175-T1 Valid prediction for GeneMark_model.23898_t Valid prediction for GeneMark_model.23917_t Valid prediction for snap_scaffold_6-snap.165-T1 Valid prediction for CodingQuarry_transcript_54767-T1 Valid prediction for GeneMark_model.23923_t Valid prediction for snap_scaffold_6-snap.173-T1 Valid prediction for GlimmerHMM_glimmerT_14299-T1 Valid prediction for GeneMark_model.23924_t Valid prediction for GeneMark_model.23867_t Valid prediction for snap_scaffold_6-snap.176-T1 Valid prediction for snap_scaffold_6-snap.195-T1 Valid prediction for snap_scaffold_6-snap.153-T1 Valid prediction for GeneMark_model.23857_t Valid prediction for GeneMark_model.23930_t Valid prediction for GeneMark_model.23886_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 4311, rend_intergenic: 4308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 8946, rend_intergenic: 2159 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23385, rend_intergenic: 11770 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66497, rend_intergenic: 27870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73805, rend_intergenic: 66672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88363, rend_intergenic: 78412 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91712, rend_intergenic: 88520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108486, rend_intergenic: 95625 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115036, rend_intergenic: 112240 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127182, rend_intergenic: 121714 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132686, rend_intergenic: 129544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149223, rend_intergenic: 132919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156525, rend_intergenic: 152980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166542, rend_intergenic: 157351 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174924, rend_intergenic: 169932 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187318, rend_intergenic: 178540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190279, rend_intergenic: 188677 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216230, rend_intergenic: 212935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227854, rend_intergenic: 226175 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242440, rend_intergenic: 234922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 253906, rend_intergenic: 246124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 254843 -exon list size: 1252 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 1.0 1.0 1.1 1.2 1.3 1.4 1.4 1.5 1.6 1.7 1.8 1.8 1.9 2.0 2.1 2.2 2.2 2.3 2.4 2.5 2.6 2.6 2.7 2.8 2.9 3.0 3.0 3.1 3.2 3.3 3.3 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.1 4.1 4.2 4.3 4.4 4.5 4.5 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.3 5.3 5.4 5.5 5.6 5.7 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.9 6.9 7.0 7.1 7.2 7.3 7.3 7.4 7.5 7.6 7.7 7.7 7.8 7.9 8.0 8.1 8.1 8.2 8.3 8.4 8.5 8.5 8.6 8.7 8.8 8.9 8.9 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.0 12.1 12.2 12.3 12.4 12.4 12.5 12.6 12.7 12.8 12.8 12.9 13.0 13.1 13.2 13.2 13.3 13.4 13.5 13.6 13.6 13.7 13.8 13.9 14.0 14.0 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.8 14.8 14.9 15.0 15.1 15.2 15.2 15.3 15.4 15.5 15.6 15.6 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.1 17.2 17.3 17.4 17.5 17.5 17.6 17.7 17.8 17.9 17.9 18.0 18.1 18.2 18.3 18.3 18.4 18.5 18.6 18.7 18.7 18.8 18.9 19.0 19.1 19.1 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.9 19.9 20.0 20.1 20.2 20.3 20.3 20.4 20.5 20.6 20.7 20.7 20.8 20.9 21.0 21.1 21.1 21.2 21.3 21.4 21.5 21.5 21.6 21.7 21.8 21.9 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.6 22.7 22.8 22.9 23.0 23.0 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.8 23.8 23.9 24.0 24.1 24.2 24.2 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.9 25.0 25.0 25.1 25.2 25.3 25.4 25.4 25.5 25.6 25.7 25.8 25.8 25.9 26.0 26.1 26.2 26.2 26.3 26.4 26.5 26.6 26.6 26.7 26.8 26.9 27.0 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.9 28.9 29.0 29.1 29.2 29.3 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.1 30.2 30.3 30.4 30.5 30.5 30.6 30.7 30.8 30.9 30.9 31.0 31.1 31.2 31.3 31.3 31.4 31.5 31.6 31.7 31.7 31.8 31.9 32.0 32.1 32.1 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.9 32.9 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.4 34.5 34.6 34.7 34.8 34.8 34.9 35.0 35.1 35.2 35.2 35.3 35.4 35.5 35.6 35.6 35.7 35.8 35.9 36.0 36.0 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.8 36.8 36.9 37.0 37.1 37.2 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.0 38.1 38.2 38.3 38.4 38.4 38.5 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.4 40.4 40.5 40.6 40.7 40.7 40.8 40.9 41.0 41.1 41.1 41.2 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.9 41.9 42.0 42.1 42.2 42.3 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.1 43.2 43.3 43.4 43.5 43.5 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.1 45.2 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.9 45.9 46.0 46.1 46.2 46.3 46.3 46.4 46.5 46.6 46.7 46.7 46.8 46.9 47.0 47.0 47.1 47.2 47.3 47.4 47.4 47.5 47.6 47.7 47.8 47.8 47.9 48.0 48.1 48.2 48.2 48.3 48.4 48.5 48.6 48.6 48.7 48.8 48.9 49.0 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.0 51.1 51.2 51.3 51.4 51.4 51.5 51.6 51.7 51.8 51.8 51.9 52.0 52.1 52.2 52.2 52.3 52.4 52.5 52.6 52.6 52.7 52.8 52.9 53.0 53.0 53.1 53.2 53.3 53.3 53.4 53.5 53.6 53.7 53.7 53.8 53.9 54.0 54.1 54.1 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.8 54.9 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.5 56.5 56.6 56.7 56.8 56.9 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.7 57.8 57.9 58.0 58.1 58.1 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.8 58.9 58.9 59.0 59.1 59.2 59.3 59.3 59.4 59.5 59.6 59.6 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.5 61.6 61.6 61.7 61.8 61.9 62.0 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.8 62.9 63.0 63.1 63.2 63.2 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.9 64.0 64.0 64.1 64.2 64.3 64.4 64.4 64.5 64.6 64.7 64.8 64.8 64.9 65.0 65.1 65.2 65.2 65.3 65.4 65.5 65.6 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.1 67.1 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.9 67.9 68.0 68.1 68.2 68.3 68.3 68.4 68.5 68.6 68.7 68.7 68.8 68.9 69.0 69.1 69.1 69.2 69.3 69.4 69.5 69.5 69.6 69.7 69.8 69.9 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.7 70.8 70.9 71.0 71.1 71.1 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.0 73.1 73.2 73.3 73.4 73.4 73.5 73.6 73.7 73.8 73.8 73.9 74.0 74.1 74.2 74.2 74.3 74.4 74.5 74.6 74.6 74.7 74.8 74.9 75.0 75.0 75.1 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.8 75.8 75.9 76.0 76.1 76.2 76.2 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.9 77.0 77.0 77.1 77.2 77.3 77.4 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.1 78.2 78.3 78.4 78.5 78.5 78.6 78.7 78.8 78.9 78.9 79.0 79.1 79.2 79.3 79.3 79.4 79.5 79.6 79.7 79.7 79.8 79.9 80.0 80.1 80.1 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.9 80.9 81.0 81.1 81.2 81.3 81.3 81.4 81.5 81.6 81.7 81.7 81.8 81.9 82.0 82.1 82.1 82.2 82.3 82.4 82.5 82.5 82.6 82.7 82.8 82.9 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.4 84.4 84.5 84.6 84.7 84.8 84.8 84.9 85.0 85.1 85.2 85.2 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 86.0 86.0 86.1 86.2 86.3 86.4 86.4 86.5 86.6 86.7 86.8 86.8 86.9 87.0 87.1 87.2 87.2 87.3 87.4 87.5 87.6 87.6 87.7 87.8 87.9 88.0 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.4 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.1 91.1 91.2 91.3 91.4 91.5 91.5 91.6 91.7 91.8 91.9 91.9 92.0 92.1 92.2 92.3 92.3 92.4 92.5 92.6 92.7 92.7 92.8 92.9 93.0 93.1 93.1 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.7 94.7 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.5 95.5 95.6 95.7 95.8 95.9 95.9 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.7 96.7 96.8 96.9 97.0 97.0 97.1 97.2 97.3 97.4 97.4 97.5 97.6 97.7 97.8 97.8 97.9 98.0 98.1 98.2 98.2 98.3 98.4 98.5 98.6 98.6 98.7 98.8 98.9 99.0 99.0 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.8 99.9 -found 49 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 4311, rend_intergenic: 4308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 8946, rend_intergenic: 2159 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23385, rend_intergenic: 11770 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66497, rend_intergenic: 27870 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 73805, rend_intergenic: 66672 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88363, rend_intergenic: 78412 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91712, rend_intergenic: 88520 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108486, rend_intergenic: 95625 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 115036, rend_intergenic: 112240 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127182, rend_intergenic: 121714 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 132686, rend_intergenic: 129544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149223, rend_intergenic: 132919 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156525, rend_intergenic: 152980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166542, rend_intergenic: 157351 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 174924, rend_intergenic: 169932 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 187318, rend_intergenic: 178540 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 190279, rend_intergenic: 188677 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 216230, rend_intergenic: 212935 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 227854, rend_intergenic: 226175 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 242440, rend_intergenic: 234922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 253906, rend_intergenic: 246124 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support