-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_6271037-6457704

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g10069.t1
Valid prediction for Augustus_model.g10073.t1
Valid prediction for GeneMark_model.25600_t
Valid prediction for GeneMark_model.25576_t
Valid prediction for Augustus_model.g10072.t1
Valid prediction for GeneMark_model.25547_t
Valid prediction for GlimmerHMM_glimmerT_15139-T1
Valid prediction for snap_scaffold_6-snap.1460-T1
Valid prediction for snap_scaffold_6-snap.1416-T1
Valid prediction for Augustus_model.g10070.t1
Valid prediction for snap_scaffold_6-snap.1446-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.1431-T1
Valid prediction for snap_scaffold_6-snap.1445-T1
Valid prediction for GlimmerHMM_glimmerT_15128-T1
Valid prediction for GlimmerHMM_glimmerT_15121-T1
Valid prediction for GlimmerHMM_glimmerT_15147-T1
Valid prediction for snap_scaffold_6-snap.1439-T1
Valid prediction for snap_scaffold_6-snap.1449-T1
Valid prediction for GeneMark_model.25605_t
Valid prediction for GeneMark_model.25583_t
Valid prediction for snap_scaffold_6-snap.1451-T1
Valid prediction for GlimmerHMM_glimmerT_15148-T1
Valid prediction for GlimmerHMM_glimmerT_15119-T1
Valid prediction for snap_scaffold_6-snap.1418-T1
Valid prediction for snap_scaffold_6-snap.1456-T1
Valid prediction for snap_scaffold_6-snap.1427-T1
Valid prediction for snap_scaffold_6-snap.1455-T1
Valid prediction for Augustus_model.g10077.t1
Valid prediction for GlimmerHMM_glimmerT_15146-T1
Valid prediction for GeneMark_model.25582_t
Valid prediction for snap_scaffold_6-snap.1459-T1
Valid prediction for snap_scaffold_6-snap.1448-T1
Valid prediction for GeneMark_model.25588_t
Valid prediction for GeneMark_model.25550_t
Valid prediction for GlimmerHMM_glimmerT_15123-T1
Valid prediction for GeneMark_model.25593_t
Valid prediction for GlimmerHMM_glimmerT_15152-T1
Valid prediction for snap_scaffold_6-snap.1436-T1
Valid prediction for GeneMark_model.25597_t
Valid prediction for snap_scaffold_6-snap.1462-T1
Valid prediction for GlimmerHMM_glimmerT_15145-T1
Valid prediction for snap_scaffold_6-snap.1424-T1
Valid prediction for snap_scaffold_6-snap.1414-T1
Valid prediction for GeneMark_model.25585_t
Valid prediction for GlimmerHMM_glimmerT_15155-T1
Valid prediction for GlimmerHMM_glimmerT_15122-T1
Valid prediction for GeneMark_model.25595_t
Valid prediction for GeneMark_model.25563_t
Valid prediction for Augustus_model.g10089.t1
Valid prediction for GeneMark_model.25602_t
Valid prediction for snap_scaffold_6-snap.1425-T1
Valid prediction for GeneMark_model.25554_t
Valid prediction for GeneMark_model.25598_t
Valid prediction for GeneMark_model.25591_t
Valid prediction for Augustus_model.g10088.t1
Valid prediction for GeneMark_model.25561_t
Valid prediction for snap_scaffold_6-snap.1433-T1
Valid prediction for snap_scaffold_6-snap.1421-T1
Valid prediction for snap_scaffold_6-snap.1453-T1
Valid prediction for GeneMark_model.25559_t
Valid prediction for snap_scaffold_6-snap.1457-T1
Valid prediction for GeneMark_model.25587_t
Valid prediction for GeneMark_model.25603_t
Valid prediction for Augustus_model.g10083.t1
Valid prediction for GlimmerHMM_glimmerT_15149-T1
Valid prediction for snap_scaffold_6-snap.1428-T1
Valid prediction for snap_scaffold_6-snap.1461-T1
Valid prediction for GeneMark_model.25548_t
Valid prediction for GlimmerHMM_glimmerT_15137-T1
Valid prediction for GeneMark_model.25557_t
Valid prediction for GeneMark_model.25565_t
Valid prediction for Augustus_model.g10074.t1
Valid prediction for GlimmerHMM_glimmerT_15129-T1
Valid prediction for Augustus_model.g10085.t1
Valid prediction for snap_scaffold_6-snap.1465-T1
Valid prediction for GeneMark_model.25552_t
Valid prediction for snap_scaffold_6-snap.1444-T1
Valid prediction for GeneMark_model.25580_t
Valid prediction for GeneMark_model.25567_t
Valid prediction for GeneMark_model.25578_t
Valid prediction for GlimmerHMM_glimmerT_15142-T1
Valid prediction for GeneMark_model.25546_t
Valid prediction for snap_scaffold_6-snap.1442-T1
Valid prediction for Augustus_model.g10081.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_6-snap.1420-T1
Valid prediction for GlimmerHMM_glimmerT_15136-T1
Valid prediction for GeneMark_model.25590_t
Valid prediction for GlimmerHMM_glimmerT_15154-T1
Valid prediction for GeneMark_model.25564_t
Valid prediction for GeneMark_model.25592_t
Valid prediction for GeneMark_model.25596_t
Valid prediction for GeneMark_model.25573_t
Valid prediction for GlimmerHMM_glimmerT_15126-T1
Valid prediction for GeneMark_model.25556_t
Valid prediction for GlimmerHMM_glimmerT_15153-T1
Valid prediction for GeneMark_model.25601_t
Valid prediction for GlimmerHMM_glimmerT_15150-T1
Valid prediction for Augustus_model.g10075.t1
Valid prediction for snap_scaffold_6-snap.1417-T1
Valid prediction for GeneMark_model.25594_t
Valid prediction for snap_scaffold_6-snap.1440-T1
Valid prediction for Augustus_model.g10084.t1
Valid prediction for GlimmerHMM_glimmerT_15131-T1
Valid prediction for GeneMark_model.25566_t
Valid prediction for GlimmerHMM_glimmerT_15133-T1
Valid prediction for Augustus_model.g10086.t1
Valid prediction for GeneMark_model.25549_t
Valid prediction for GeneMark_model.25562_t
Valid prediction for GlimmerHMM_glimmerT_15141-T1
Valid prediction for GlimmerHMM_glimmerT_15132-T1
Valid prediction for GeneMark_model.25579_t
Valid prediction for snap_scaffold_6-snap.1447-T1
Valid prediction for GlimmerHMM_glimmerT_15125-T1
Valid prediction for GeneMark_model.25577_t
Valid prediction for GeneMark_model.25551_t
Valid prediction for snap_scaffold_6-snap.1441-T1
Valid prediction for GlimmerHMM_glimmerT_15124-T1
Valid prediction for snap_scaffold_6-snap.1435-T1
Valid prediction for snap_scaffold_6-snap.1463-T1
Valid prediction for snap_scaffold_6-snap.1419-T1
Valid prediction for snap_scaffold_6-snap.1422-T1
Valid prediction for GlimmerHMM_glimmerT_15134-T1
Valid prediction for GeneMark_model.25581_t
Valid prediction for Augustus_model.g10076.t1
Valid prediction for snap_scaffold_6-snap.1454-T1
Valid prediction for Augustus_model.g10087.t1
Valid prediction for GlimmerHMM_glimmerT_15120-T1
Valid prediction for GeneMark_model.25555_t
Valid prediction for snap_scaffold_6-snap.1450-T1
Valid prediction for GlimmerHMM_glimmerT_15135-T1
Valid prediction for snap_scaffold_6-snap.1429-T1
Valid prediction for Augustus_model.g10078.t1
Valid prediction for snap_scaffold_6-snap.1443-T1
Valid prediction for snap_scaffold_6-snap.1464-T1
Valid prediction for GeneMark_model.25568_t
Valid prediction for snap_scaffold_6-snap.1423-T1
Valid prediction for GeneMark_model.25558_t
Valid prediction for GeneMark_model.25575_t
Valid prediction for GeneMark_model.25553_t
Valid prediction for snap_scaffold_6-snap.1430-T1
Valid prediction for GeneMark_model.25586_t
Valid prediction for snap_scaffold_6-snap.1432-T1
Valid prediction for GlimmerHMM_glimmerT_15130-T1
Valid prediction for GlimmerHMM_glimmerT_15127-T1
Valid prediction for GlimmerHMM_glimmerT_15143-T1
Valid prediction for GeneMark_model.25571_t
Valid prediction for Augustus_model.g10080.t1
Valid prediction for GlimmerHMM_glimmerT_15140-T1
Valid prediction for GeneMark_model.25560_t
Valid prediction for snap_scaffold_6-snap.1415-T1
Valid prediction for GeneMark_model.25574_t
Valid prediction for snap_scaffold_6-snap.1437-T1
Valid prediction for Augustus_model.g10079.t1
Valid prediction for snap_scaffold_6-snap.1458-T1
Valid prediction for GeneMark_model.25604_t
Valid prediction for GeneMark_model.25569_t
Valid prediction for snap_scaffold_6-snap.1438-T1
Valid prediction for Augustus_model.g10071.t1
Valid prediction for GeneMark_model.25599_t
Valid prediction for GlimmerHMM_glimmerT_15144-T1
Valid prediction for GeneMark_model.25584_t
Valid prediction for snap_scaffold_6-snap.1434-T1
Valid prediction for GlimmerHMM_glimmerT_15156-T1
Valid prediction for snap_scaffold_6-snap.1426-T1
Valid prediction for Augustus_model.g10082.t1
Valid prediction for GlimmerHMM_glimmerT_15138-T1
Valid prediction for snap_scaffold_6-snap.1452-T1
Valid prediction for GeneMark_model.25589_t
Valid prediction for GlimmerHMM_glimmerT_15151-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11826, rend_intergenic: 10522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12337, rend_intergenic: 11959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14383, rend_intergenic: 14217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16054, rend_intergenic: 15138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20862, rend_intergenic: 20545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22846, rend_intergenic: 22555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32259, rend_intergenic: 30449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42560, rend_intergenic: 39618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46960, rend_intergenic: 44098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54575, rend_intergenic: 54195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58255, rend_intergenic: 55930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71005, rend_intergenic: 59835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71499, rend_intergenic: 71210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73358, rend_intergenic: 71515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77902, rend_intergenic: 76688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85918, rend_intergenic: 84801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98021, rend_intergenic: 86366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99670, rend_intergenic: 98927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105276, rend_intergenic: 101197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112333, rend_intergenic: 106344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116834, rend_intergenic: 115004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124985, rend_intergenic: 124373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145719, rend_intergenic: 128242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 186668
-exon list size: 773


building trellis

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80.8    
80.9    
81.0    
81.2    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.9    
84.0    
84.1    
84.3    
84.4    
84.5    
84.6    
84.8    
84.9    
85.0    
85.2    
85.3    
85.4    
85.5    
85.7    
85.8    
85.9    
86.1    
86.2    
86.3    
86.5    
86.6    
86.7    
86.8    
87.0    
87.1    
87.2    
87.4    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.6    
88.8    
88.9    
89.0    
89.2    
89.3    
89.4    
89.5    
89.7    
89.8    
89.9    
90.1    
90.2    
90.3    
90.5    
90.6    
90.7    
90.8    
91.0    
91.1    
91.2    
91.4    
91.5    
91.6    
91.7    
91.9    
92.0    
92.1    
92.3    
92.4    
92.5    
92.6    
92.8    
92.9    
93.0    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.8    
95.0    
95.1    
95.2    
95.4    
95.5    
95.6    
95.7    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.8    
96.9    
97.0    
97.2    
97.3    
97.4    
97.5    
97.7    
97.8    
97.9    
98.1    
98.2    
98.3    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.4    
99.5    
99.6    
99.7    
99.9    
-found 58 predictions from path traversal
Error with prediction: snap lend_intergenic: 11826, rend_intergenic: 10522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 12337, rend_intergenic: 11959  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 14383, rend_intergenic: 14217  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16054, rend_intergenic: 15138  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20862, rend_intergenic: 20545  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22846, rend_intergenic: 22555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32259, rend_intergenic: 30449  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42560, rend_intergenic: 39618  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46960, rend_intergenic: 44098  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 54575, rend_intergenic: 54195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58255, rend_intergenic: 55930  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71005, rend_intergenic: 59835  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71499, rend_intergenic: 71210  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73358, rend_intergenic: 71515  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77902, rend_intergenic: 76688  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85918, rend_intergenic: 84801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98021, rend_intergenic: 86366  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99670, rend_intergenic: 98927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105276, rend_intergenic: 101197  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112333, rend_intergenic: 106344  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116834, rend_intergenic: 115004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124985, rend_intergenic: 124373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145719, rend_intergenic: 128242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support