-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_6142822-6279317

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g10069.t1
Valid prediction for snap_scaffold_6-snap.1414-T1
Valid prediction for snap_scaffold_6-snap.1400-T1
Valid prediction for GlimmerHMM_glimmerT_15110-T1
Valid prediction for snap_scaffold_6-snap.1396-T1
Valid prediction for GlimmerHMM_glimmerT_15117-T1
Valid prediction for GeneMark_model.25529_t
Valid prediction for snap_scaffold_6-snap.1402-T1
Valid prediction for snap_scaffold_6-snap.1384-T1
Valid prediction for GlimmerHMM_glimmerT_15118-T1
Valid prediction for GlimmerHMM_glimmerT_15106-T1
Valid prediction for GeneMark_model.25524_t
Valid prediction for GeneMark_model.25544_t
Valid prediction for Augustus_model.g10065.t1
Valid prediction for GeneMark_model.25543_t
Valid prediction for GeneMark_model.25541_t
Valid prediction for GlimmerHMM_glimmerT_15107-T1
Valid prediction for GeneMark_model.25535_t
Valid prediction for snap_scaffold_6-snap.1404-T1
Valid prediction for GeneMark_model.25530_t
Valid prediction for snap_scaffold_6-snap.1413-T1
Valid prediction for Augustus_model.g10061.t1
Valid prediction for GeneMark_model.25519_t
Valid prediction for GeneMark_model.25533_t
Valid prediction for GlimmerHMM_glimmerT_15114-T1
Valid prediction for GeneMark_model.25537_t
Valid prediction for Augustus_model.g10060.t1
Valid prediction for snap_scaffold_6-snap.1407-T1
Valid prediction for snap_scaffold_6-snap.1408-T1
Valid prediction for snap_scaffold_6-snap.1394-T1
Valid prediction for snap_scaffold_6-snap.1398-T1
Valid prediction for Augustus_model.g10062.t1
Valid prediction for GeneMark_model.25514_t
Valid prediction for Augustus_model.g10068.t1
Valid prediction for snap_scaffold_6-snap.1386-T1
Valid prediction for GeneMark_model.25546_t
Valid prediction for GlimmerHMM_glimmerT_15111-T1
Valid prediction for snap_scaffold_6-snap.1390-T1
Valid prediction for GeneMark_model.25528_t
Valid prediction for snap_scaffold_6-snap.1391-T1
Couldn't classify 3877, 4113
Sorry, prediction pasa_asmbl_46941.p1 fails validation.
(CCA)	 CC	3877-4113	GT	ACG
(GGC)	 AG	4246-4323	GT	AGG
(GAA)	 AG	4439-4636	GT	AGG
(ACC)	 AG	4816-4905	GT	GGG
(GAC)	 AG	5132-5310	GT	AGG
(TCT)	 AG	5610-5763	GT	AGG
-recovered pasa_asmbl_46941.p1, terminal, 5610, 5763
-recovered pasa_asmbl_46941.p1, internal, 4246, 4323
-recovered pasa_asmbl_46941.p1, internal, 4439, 4636
-recovered pasa_asmbl_46941.p1, internal, 4816, 4905
-recovered pasa_asmbl_46941.p1, internal, 5132, 5310
-recovered pasa_asmbl_46941.p1, internal, 5610, 5763
Valid prediction for GeneMark_model.25516_t
Valid prediction for GlimmerHMM_glimmerT_15103-T1
Valid prediction for GeneMark_model.25521_t
Valid prediction for GlimmerHMM_glimmerT_15104-T1
Valid prediction for GeneMark_model.25526_t
Valid prediction for snap_scaffold_6-snap.1411-T1
Valid prediction for Augustus_model.g10064.t1
Valid prediction for GlimmerHMM_glimmerT_15102-T1
Valid prediction for GeneMark_model.25531_t
Valid prediction for GeneMark_model.25539_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.25525_t
Valid prediction for GlimmerHMM_glimmerT_15101-T1
Valid prediction for GeneMark_model.25542_t
Valid prediction for snap_scaffold_6-snap.1395-T1
Valid prediction for snap_scaffold_6-snap.1401-T1
Valid prediction for GeneMark_model.25518_t
Valid prediction for GeneMark_model.25523_t
Valid prediction for GeneMark_model.25545_t
Valid prediction for GlimmerHMM_glimmerT_15115-T1
Valid prediction for snap_scaffold_6-snap.1387-T1
Valid prediction for GlimmerHMM_glimmerT_15109-T1
Valid prediction for GeneMark_model.25532_t
Valid prediction for snap_scaffold_6-snap.1403-T1
Valid prediction for GeneMark_model.25520_t
Valid prediction for snap_scaffold_6-snap.1410-T1
Valid prediction for snap_scaffold_6-snap.1393-T1
Valid prediction for snap_scaffold_6-snap.1405-T1
Valid prediction for GeneMark_model.25515_t
Valid prediction for GlimmerHMM_glimmerT_15116-T1
Valid prediction for GeneMark_model.25527_t
Valid prediction for snap_scaffold_6-snap.1409-T1
Valid prediction for Augustus_model.g10063.t1
Valid prediction for snap_scaffold_6-snap.1397-T1
Valid prediction for snap_scaffold_6-snap.1399-T1
Valid prediction for GeneMark_model.25513_t
Valid prediction for GlimmerHMM_glimmerT_15105-T1
Valid prediction for GeneMark_model.25534_t
Valid prediction for GeneMark_model.25536_t
Valid prediction for snap_scaffold_6-snap.1412-T1
Valid prediction for GeneMark_model.25517_t
Valid prediction for GeneMark_model.25522_t
Valid prediction for snap_scaffold_6-snap.1385-T1
Valid prediction for snap_scaffold_6-snap.1388-T1
Valid prediction for GeneMark_model.25538_t
Valid prediction for snap_scaffold_6-snap.1392-T1
Valid prediction for Augustus_model.g10066.t1
Valid prediction for GlimmerHMM_glimmerT_15112-T1
Valid prediction for Augustus_model.g10067.t1
Valid prediction for GlimmerHMM_glimmerT_15108-T1
Valid prediction for snap_scaffold_6-snap.1406-T1
Valid prediction for GlimmerHMM_glimmerT_15113-T1
Valid prediction for GeneMark_model.25540_t
Valid prediction for snap_scaffold_6-snap.1389-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 43437, rend_intergenic: 31674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57780, rend_intergenic: 52405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77387, rend_intergenic: 74117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102673, rend_intergenic: 100145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 136496
-exon list size: 370


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.2    
2.4    
2.7    
3.0    
3.2    
3.5    
3.8    
4.0    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.2    
6.5    
6.7    
7.0    
7.3    
7.5    
7.8    
8.1    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.8    
11.0    
11.3    
11.6    
11.8    
12.1    
12.4    
12.6    
12.9    
13.2    
13.4    
13.7    
14.0    
14.2    
14.5    
14.8    
15.1    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.5    
18.8    
19.1    
19.4    
19.6    
19.9    
20.2    
20.4    
20.7    
21.0    
21.2    
21.5    
21.8    
22.0    
22.3    
22.6    
22.8    
23.1    
23.4    
23.7    
23.9    
24.2    
24.5    
24.7    
25.0    
25.3    
25.5    
25.8    
26.1    
26.3    
26.6    
26.9    
27.2    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.0    
29.3    
29.6    
29.8    
30.1    
30.4    
30.6    
30.9    
31.2    
31.5    
31.7    
32.0    
32.3    
32.5    
32.8    
33.1    
33.3    
33.6    
33.9    
34.1    
34.4    
34.7    
34.9    
35.2    
35.5    
35.8    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.6    
37.9    
38.2    
38.4    
38.7    
39.0    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.1    
41.4    
41.7    
41.9    
42.2    
42.5    
42.7    
43.0    
43.3    
43.5    
43.8    
44.1    
44.4    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.2    
46.5    
46.8    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.7    
48.9    
49.2    
49.5    
49.7    
50.0    
50.3    
50.5    
50.8    
51.1    
51.3    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.2    
53.5    
53.8    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.6    
55.9    
56.2    
56.5    
56.7    
57.0    
57.3    
57.5    
57.8    
58.1    
58.3    
58.6    
58.9    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.0    
61.3    
61.6    
61.8    
62.1    
62.4    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.2    
64.5    
64.8    
65.1    
65.3    
65.6    
65.9    
66.1    
66.4    
66.7    
66.9    
67.2    
67.5    
67.7    
68.0    
68.3    
68.5    
68.8    
69.1    
69.4    
69.6    
69.9    
70.2    
70.4    
70.7    
71.0    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.8    
73.1    
73.4    
73.7    
73.9    
74.2    
74.5    
74.7    
75.0    
75.3    
75.5    
75.8    
76.1    
76.3    
76.6    
76.9    
77.2    
77.4    
77.7    
78.0    
78.2    
78.5    
78.8    
79.0    
79.3    
79.6    
79.8    
80.1    
80.4    
80.6    
80.9    
81.2    
81.5    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
84.9    
85.2    
85.5    
85.8    
86.0    
86.3    
86.6    
86.8    
87.1    
87.4    
87.6    
87.9    
88.2    
88.4    
88.7    
89.0    
89.2    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
91.9    
92.2    
92.5    
92.7    
93.0    
93.3    
93.5    
93.8    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
96.0    
96.2    
96.5    
96.8    
97.0    
97.3    
97.6    
97.8    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 43437, rend_intergenic: 31674  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57780, rend_intergenic: 52405  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77387, rend_intergenic: 74117  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 102673, rend_intergenic: 100145  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 6 predictions persist after filtering for low support