-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_3887452-4001816

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.24994_t
Valid prediction for Augustus_model.g9828.t1
Valid prediction for GeneMark_model.25009_t
Valid prediction for GeneMark_model.25024_t
Valid prediction for Augustus_model.g9819.t1
Valid prediction for GeneMark_model.25012_t
Valid prediction for GeneMark_model.25021_t
Valid prediction for GeneMark_model.24996_t
Valid prediction for Augustus_model.g9827.t1
Valid prediction for snap_scaffold_6-snap.917-T1
Valid prediction for Augustus_model.g9822.t1
Valid prediction for snap_scaffold_6-snap.910-T1
Valid prediction for snap_scaffold_6-snap.916-T1
Valid prediction for Augustus_model.g9829.t1
Valid prediction for Augustus_model.g9823.t1
Valid prediction for GeneMark_model.24998_t
Valid prediction for GlimmerHMM_glimmerT_14753-T1
Valid prediction for snap_scaffold_6-snap.934-T1
Valid prediction for GlimmerHMM_glimmerT_14759-T1
Valid prediction for snap_scaffold_6-snap.931-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_6-snap.907-T1
Valid prediction for snap_scaffold_6-snap.922-T1
Valid prediction for GeneMark_model.25023_t
Valid prediction for GeneMark_model.25000_t
Valid prediction for GlimmerHMM_glimmerT_14758-T1
Valid prediction for Augustus_model.g9825.t1
Valid prediction for GeneMark_model.25018_t
Valid prediction for snap_scaffold_6-snap.909-T1
Valid prediction for GeneMark_model.25011_t
Valid prediction for GlimmerHMM_glimmerT_14746-T1
Valid prediction for GlimmerHMM_glimmerT_14747-T1
Valid prediction for GeneMark_model.25002_t
Valid prediction for GeneMark_model.25007_t
Valid prediction for Augustus_model.g9824.t1
Valid prediction for snap_scaffold_6-snap.933-T1
Valid prediction for GlimmerHMM_glimmerT_14750-T1
Valid prediction for GlimmerHMM_glimmerT_14743-T1
Valid prediction for GlimmerHMM_glimmerT_14755-T1
Valid prediction for snap_scaffold_6-snap.924-T1
Valid prediction for GlimmerHMM_glimmerT_14757-T1
Valid prediction for GeneMark_model.25019_t
Valid prediction for GeneMark_model.25003_t
Valid prediction for GlimmerHMM_glimmerT_14760-T1
Valid prediction for snap_scaffold_6-snap.915-T1
Valid prediction for GeneMark_model.25005_t
Valid prediction for snap_scaffold_6-snap.908-T1
Valid prediction for snap_scaffold_6-snap.928-T1
Valid prediction for snap_scaffold_6-snap.927-T1
Valid prediction for GlimmerHMM_glimmerT_14762-T1
Valid prediction for snap_scaffold_6-snap.920-T1
Valid prediction for GlimmerHMM_glimmerT_14751-T1
Valid prediction for snap_scaffold_6-snap.930-T1
Valid prediction for snap_scaffold_6-snap.926-T1
Valid prediction for snap_scaffold_6-snap.918-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14749-T1
Valid prediction for GeneMark_model.24997_t
Valid prediction for Augustus_model.g9818.t1
Valid prediction for GlimmerHMM_glimmerT_14761-T1
Valid prediction for snap_scaffold_6-snap.912-T1
Valid prediction for snap_scaffold_6-snap.932-T1
Valid prediction for GeneMark_model.25014_t
Valid prediction for GlimmerHMM_glimmerT_14741-T1
Valid prediction for GeneMark_model.24999_t
Valid prediction for snap_scaffold_6-snap.925-T1
Valid prediction for GlimmerHMM_glimmerT_14754-T1
Valid prediction for GeneMark_model.25015_t
Valid prediction for snap_scaffold_6-snap.911-T1
Valid prediction for Augustus_model.g9820.t1
Valid prediction for GlimmerHMM_glimmerT_14756-T1
Valid prediction for snap_scaffold_6-snap.919-T1
Valid prediction for GeneMark_model.25001_t
Valid prediction for GlimmerHMM_glimmerT_14748-T1
Valid prediction for GlimmerHMM_glimmerT_14752-T1
Valid prediction for GlimmerHMM_glimmerT_14744-T1
Valid prediction for snap_scaffold_6-snap.929-T1
Valid prediction for snap_scaffold_6-snap.923-T1
Valid prediction for GeneMark_model.25017_t
Valid prediction for Augustus_model.g9826.t1
Valid prediction for GeneMark_model.25008_t
Valid prediction for GeneMark_model.24995_t
Valid prediction for GeneMark_model.25006_t
Valid prediction for snap_scaffold_6-snap.921-T1
Valid prediction for GeneMark_model.25020_t
Valid prediction for GeneMark_model.25016_t
Valid prediction for GlimmerHMM_glimmerT_14745-T1
Valid prediction for Augustus_model.g9821.t1
Valid prediction for snap_scaffold_6-snap.913-T1
Valid prediction for snap_scaffold_6-snap.914-T1
Valid prediction for GeneMark_model.25004_t
Valid prediction for snap_scaffold_6-snap.935-T1
Valid prediction for GlimmerHMM_glimmerT_14742-T1
Valid prediction for GeneMark_model.25013_t
Valid prediction for GeneMark_model.25010_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 62792, rend_intergenic: 59112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71041, rend_intergenic: 63660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76385, rend_intergenic: 73599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 114365
-exon list size: 371


building trellis

0.3    
0.5    
0.8    
1.1    
1.3    
1.6    
1.9    
2.1    
2.4    
2.7    
2.9    
3.2    
3.5    
3.8    
4.0    
4.3    
4.6    
4.8    
5.1    
5.4    
5.6    
5.9    
6.2    
6.4    
6.7    
7.0    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.8    
9.1    
9.4    
9.7    
9.9    
10.2    
10.5    
10.7    
11.0    
11.3    
11.5    
11.8    
12.1    
12.3    
12.6    
12.9    
13.1    
13.4    
13.7    
13.9    
14.2    
14.5    
14.7    
15.0    
15.3    
15.5    
15.8    
16.1    
16.4    
16.6    
16.9    
17.2    
17.4    
17.7    
18.0    
18.2    
18.5    
18.8    
19.0    
19.3    
19.6    
19.8    
20.1    
20.4    
20.6    
20.9    
21.2    
21.4    
21.7    
22.0    
22.3    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.7    
26.0    
26.3    
26.5    
26.8    
27.1    
27.3    
27.6    
27.9    
28.2    
28.4    
28.7    
29.0    
29.2    
29.5    
29.8    
30.0    
30.3    
30.6    
30.8    
31.1    
31.4    
31.6    
31.9    
32.2    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.0    
34.3    
34.6    
34.9    
35.1    
35.4    
35.7    
35.9    
36.2    
36.5    
36.7    
37.0    
37.3    
37.5    
37.8    
38.1    
38.3    
38.6    
38.9    
39.1    
39.4    
39.7    
39.9    
40.2    
40.5    
40.8    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.6    
42.9    
43.2    
43.4    
43.7    
44.0    
44.2    
44.5    
44.8    
45.0    
45.3    
45.6    
45.8    
46.1    
46.4    
46.6    
46.9    
47.2    
47.5    
47.7    
48.0    
48.3    
48.5    
48.8    
49.1    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
50.9    
51.2    
51.5    
51.7    
52.0    
52.3    
52.5    
52.8    
53.1    
53.4    
53.6    
53.9    
54.2    
54.4    
54.7    
55.0    
55.2    
55.5    
55.8    
56.0    
56.3    
56.6    
56.8    
57.1    
57.4    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.2    
59.5    
59.8    
60.1    
60.3    
60.6    
60.9    
61.1    
61.4    
61.7    
61.9    
62.2    
62.5    
62.7    
63.0    
63.3    
63.5    
63.8    
64.1    
64.3    
64.6    
64.9    
65.1    
65.4    
65.7    
66.0    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.8    
68.1    
68.4    
68.6    
68.9    
69.2    
69.4    
69.7    
70.0    
70.2    
70.5    
70.8    
71.0    
71.3    
71.6    
71.8    
72.1    
72.4    
72.7    
72.9    
73.2    
73.5    
73.7    
74.0    
74.3    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.7    
78.0    
78.3    
78.6    
78.8    
79.1    
79.4    
79.6    
79.9    
80.2    
80.4    
80.7    
81.0    
81.2    
81.5    
81.8    
82.0    
82.3    
82.6    
82.8    
83.1    
83.4    
83.6    
83.9    
84.2    
84.5    
84.7    
85.0    
85.3    
85.5    
85.8    
86.1    
86.3    
86.6    
86.9    
87.1    
87.4    
87.7    
87.9    
88.2    
88.5    
88.7    
89.0    
89.3    
89.5    
89.8    
90.1    
90.3    
90.6    
90.9    
91.2    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.0    
93.3    
93.6    
93.8    
94.1    
94.4    
94.6    
94.9    
95.2    
95.4    
95.7    
96.0    
96.2    
96.5    
96.8    
97.1    
97.3    
97.6    
97.9    
98.1    
98.4    
98.7    
98.9    
99.2    
99.5    
99.7    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 62792, rend_intergenic: 59112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71041, rend_intergenic: 63660  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76385, rend_intergenic: 73599  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support