-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_2341024-2551516

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.578-T1
Valid prediction for snap_scaffold_6-snap.581-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for Augustus_model.g9660.t1
Valid prediction for GeneMark_model.24540_t
Valid prediction for GlimmerHMM_glimmerT_14504-T1
Valid prediction for snap_scaffold_6-snap.553-T1
Valid prediction for GeneMark_model.24506_t
Valid prediction for GeneMark_model.24516_t
Valid prediction for snap_scaffold_6-snap.565-T1
Valid prediction for GeneMark_model.24560_t
Valid prediction for GlimmerHMM_glimmerT_14497-T1
Valid prediction for GlimmerHMM_glimmerT_14507-T1
Valid prediction for GeneMark_model.24589_t
Valid prediction for snap_scaffold_6-snap.535-T1
Valid prediction for GeneMark_model.24580_t
Valid prediction for GeneMark_model.24510_t
Valid prediction for GeneMark_model.24564_t
Valid prediction for GeneMark_model.24530_t
Valid prediction for GeneMark_model.24533_t
Valid prediction for GeneMark_model.24544_t
Valid prediction for GlimmerHMM_glimmerT_14505-T1
Valid prediction for GeneMark_model.24557_t
Valid prediction for snap_scaffold_6-snap.577-T1
Valid prediction for GeneMark_model.24536_t
Valid prediction for snap_scaffold_6-snap.571-T1
Valid prediction for snap_scaffold_6-snap.543-T1
Valid prediction for GlimmerHMM_glimmerT_14515-T1
Valid prediction for GeneMark_model.24569_t
Valid prediction for snap_scaffold_6-snap.551-T1
Valid prediction for snap_scaffold_6-snap.557-T1
Valid prediction for snap_scaffold_6-snap.567-T1
Valid prediction for snap_scaffold_6-snap.563-T1
Valid prediction for snap_scaffold_6-snap.584-T1
Valid prediction for GeneMark_model.24566_t
Valid prediction for GeneMark_model.24591_t
Valid prediction for snap_scaffold_6-snap.538-T1
Valid prediction for GlimmerHMM_glimmerT_14512-T1
Couldn't classify 146190, 146302
Couldn't classify 146351, 146558
Sorry, prediction pasa_asmbl_46701.p2 fails validation.
(ATG)	 AT	146190-146302	AT	ACA
(TCA)	 AC	146351-146558	GA	AGG
Valid prediction for GlimmerHMM_glimmerT_14513-T1
Valid prediction for GlimmerHMM_glimmerT_14506-T1
Valid prediction for GeneMark_model.24577_t
Valid prediction for GeneMark_model.24542_t
Valid prediction for CodingQuarry_transcript_54799-T1
Valid prediction for GeneMark_model.24549_t
Valid prediction for snap_scaffold_6-snap.559-T1
Valid prediction for snap_scaffold_6-snap.575-T1
Valid prediction for GlimmerHMM_glimmerT_14517-T1
Valid prediction for snap_scaffold_6-snap.583-T1
Valid prediction for snap_scaffold_6-snap.573-T1
Valid prediction for pasa_asmbl_46708.p1
Valid prediction for GlimmerHMM_glimmerT_14516-T1
Valid prediction for snap_scaffold_6-snap.536-T1
Valid prediction for GeneMark_model.24527_t
Valid prediction for GeneMark_model.24518_t
Valid prediction for snap_scaffold_6-snap.589-T1
Valid prediction for GlimmerHMM_glimmerT_14495-T1
Valid prediction for Augustus_model.g9655.t1
Valid prediction for GeneMark_model.24592_t
Valid prediction for GeneMark_model.24550_t
Valid prediction for GeneMark_model.24513_t
Valid prediction for GeneMark_model.24587_t
Valid prediction for GeneMark_model.24534_t
Valid prediction for GeneMark_model.24538_t
Valid prediction for GlimmerHMM_glimmerT_14508-T1
Valid prediction for GeneMark_model.24532_t
Valid prediction for GeneMark_model.24572_t
Valid prediction for GeneMark_model.24588_t
Valid prediction for GeneMark_model.24554_t
Valid prediction for GlimmerHMM_glimmerT_14499-T1
Valid prediction for Augustus_model.g9653.t1
Valid prediction for GeneMark_model.24555_t
Valid prediction for snap_scaffold_6-snap.545-T1
Valid prediction for snap_scaffold_6-snap.547-T1
Valid prediction for GeneMark_model.24583_t
Valid prediction for GeneMark_model.24515_t
Valid prediction for GeneMark_model.24526_t
Valid prediction for Augustus_model.g9663.t1
Valid prediction for Augustus_model.g9661.t1
Valid prediction for snap_scaffold_6-snap.560-T1
Valid prediction for GlimmerHMM_glimmerT_14520-T1
Valid prediction for GeneMark_model.24552_t
Valid prediction for snap_scaffold_6-snap.537-T1
Valid prediction for GeneMark_model.24512_t
Valid prediction for snap_scaffold_6-snap.550-T1
Valid prediction for GeneMark_model.24545_t
Valid prediction for snap_scaffold_6-snap.541-T1
Valid prediction for snap_scaffold_6-snap.569-T1
Valid prediction for GeneMark_model.24519_t
Valid prediction for GeneMark_model.24559_t
Valid prediction for HiQ_model.g9664.t1
Valid prediction for GeneMark_model.24574_t
Valid prediction for GeneMark_model.24562_t
Valid prediction for GeneMark_model.24522_t
Valid prediction for GeneMark_model.24547_t
Valid prediction for GeneMark_model.24508_t
Valid prediction for snap_scaffold_6-snap.556-T1
Valid prediction for GeneMark_model.24524_t
Valid prediction for GlimmerHMM_glimmerT_14502-T1
Valid prediction for Augustus_model.g9656.t1
Valid prediction for CodingQuarry_transcript_54798-T1
Valid prediction for GlimmerHMM_glimmerT_14496-T1
Valid prediction for snap_scaffold_6-snap.555-T1
Valid prediction for GeneMark_model.24535_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g9667.t1
Valid prediction for snap_scaffold_6-snap.542-T1
Valid prediction for GeneMark_model.24523_t
Valid prediction for GeneMark_model.24570_t
Valid prediction for GeneMark_model.24507_t
Valid prediction for snap_scaffold_6-snap.544-T1
Valid prediction for snap_scaffold_6-snap.582-T1
Valid prediction for GlimmerHMM_glimmerT_14518-T1
Valid prediction for GeneMark_model.24565_t
Valid prediction for GlimmerHMM_glimmerT_14511-T1
Valid prediction for GlimmerHMM_glimmerT_14498-T1
Couldn't classify 30227, 30445
Sorry, prediction pasa_asmbl_48085.p1 fails validation.
(GCC)	 CA	30227-30445	GT	AGG
(GAC)	 AG	31739-31954	AC	GAA
-recovered pasa_asmbl_48085.p1, terminal, 31739, 31954
Valid prediction for GeneMark_model.24517_t
Valid prediction for GeneMark_model.24514_t
Valid prediction for GeneMark_model.24579_t
Valid prediction for GeneMark_model.24548_t
Valid prediction for snap_scaffold_6-snap.532-T1
Valid prediction for GlimmerHMM_glimmerT_14510-T1
Valid prediction for GeneMark_model.24573_t
Valid prediction for snap_scaffold_6-snap.588-T1
Valid prediction for GlimmerHMM_glimmerT_14521-T1
Valid prediction for GeneMark_model.24543_t
Valid prediction for snap_scaffold_6-snap.549-T1
Valid prediction for snap_scaffold_6-snap.548-T1
Valid prediction for GeneMark_model.24531_t
Valid prediction for GeneMark_model.24553_t
Valid prediction for GlimmerHMM_glimmerT_14500-T1
Valid prediction for snap_scaffold_6-snap.554-T1
Valid prediction for snap_scaffold_6-snap.564-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.24539_t
Valid prediction for GeneMark_model.24511_t
Valid prediction for GeneMark_model.24541_t
Valid prediction for snap_scaffold_6-snap.585-T1
Valid prediction for GeneMark_model.24546_t
Valid prediction for snap_scaffold_6-snap.561-T1
Valid prediction for snap_scaffold_6-snap.572-T1
Valid prediction for snap_scaffold_6-snap.531-T1
Valid prediction for snap_scaffold_6-snap.566-T1
Valid prediction for HiQ_model.g9659.t1
Valid prediction for GeneMark_model.24585_t
Valid prediction for GeneMark_model.24561_t
Valid prediction for GeneMark_model.24521_t
Valid prediction for GeneMark_model.24537_t
Valid prediction for GeneMark_model.24520_t
Valid prediction for snap_scaffold_6-snap.540-T1
Valid prediction for snap_scaffold_6-snap.568-T1
Valid prediction for snap_scaffold_6-snap.533-T1
Couldn't classify 24279, 24514
Sorry, prediction pasa_asmbl_48088.p1 fails validation.
(ATG)	 CC	22828-22942	GT	AGG
(CGT)	 AG	24279-24514	CC	TCC
-recovered pasa_asmbl_48088.p1, initial, 22828, 22942
Valid prediction for snap_scaffold_6-snap.570-T1
Valid prediction for GeneMark_model.24525_t
Valid prediction for GeneMark_model.24576_t
Valid prediction for GeneMark_model.24582_t
Valid prediction for CodingQuarry_transcript_54796-T1
Valid prediction for Augustus_model.g9662.t1
Valid prediction for snap_scaffold_6-snap.579-T1
Valid prediction for GlimmerHMM_glimmerT_14519-T1
Valid prediction for GlimmerHMM_glimmerT_14503-T1
Valid prediction for GeneMark_model.24578_t
Valid prediction for snap_scaffold_6-snap.580-T1
Valid prediction for snap_scaffold_6-snap.574-T1
Valid prediction for GeneMark_model.24551_t
Valid prediction for snap_scaffold_6-snap.586-T1
Valid prediction for snap_scaffold_6-snap.539-T1
Valid prediction for snap_scaffold_6-snap.562-T1
Valid prediction for Augustus_model.g9658.t1
Valid prediction for Augustus_model.g9654.t1
Valid prediction for GeneMark_model.24529_t
Valid prediction for snap_scaffold_6-snap.587-T1
Couldn't classify 4064, 4257
Couldn't classify 7250, 7390
Sorry, prediction pasa_asmbl_49324.p1 fails validation.
(TGC)	 GG	4064-4257	GT	AGG
(TGC)	 AG	4465-4618	GT	AGG
(GAT)	 AG	5519-5665	GT	AGG
(AAC)	 AG	7250-7390	AG	GCA
-recovered pasa_asmbl_49324.p1, internal, 4465, 4618
-recovered pasa_asmbl_49324.p1, internal, 5519, 5665
Valid prediction for GeneMark_model.24581_t
Valid prediction for Augustus_model.g9665.t1
Valid prediction for GeneMark_model.24584_t
Valid prediction for GeneMark_model.24563_t
Valid prediction for GeneMark_model.24568_t
Valid prediction for snap_scaffold_6-snap.534-T1
Valid prediction for snap_scaffold_6-snap.576-T1
Valid prediction for GlimmerHMM_glimmerT_14494-T1
Valid prediction for snap_scaffold_6-snap.558-T1
Valid prediction for GeneMark_model.24558_t
Valid prediction for Augustus_model.g9668.t1
Valid prediction for snap_scaffold_6-snap.552-T1
Valid prediction for GeneMark_model.24509_t
Valid prediction for GeneMark_model.24590_t
Valid prediction for GeneMark_model.24575_t
Valid prediction for GeneMark_model.24567_t
Valid prediction for GeneMark_model.24528_t
Valid prediction for Augustus_model.g9657.t1
Valid prediction for GeneMark_model.24586_t
Valid prediction for GeneMark_model.24556_t
Valid prediction for snap_scaffold_6-snap.546-T1
Valid prediction for Augustus_model.g9666.t1
Couldn't classify 68881, 69114
Sorry, prediction pasa_asmbl_48075.p1 fails validation.
(AAA)	 AG	68881-69114	GT	AGG
(AAT)	 AG	69664-69781	GT	AGG
(AGC)	 AG	71418-71497	GT	ATG
(TAC)	 AG	72620-72791	GT	AAG
(TGT)	 AG	73064-73131	GT	AGG
(AGC)	 AG	74161-74241	CT	AAC
-recovered pasa_asmbl_48075.p1, terminal, 74161, 74241
-recovered pasa_asmbl_48075.p1, internal, 68881, 69114
-recovered pasa_asmbl_48075.p1, internal, 69664, 69781
-recovered pasa_asmbl_48075.p1, internal, 71418, 71497
-recovered pasa_asmbl_48075.p1, internal, 72620, 72791
-recovered pasa_asmbl_48075.p1, internal, 73064, 73131
Valid prediction for GlimmerHMM_glimmerT_14509-T1
Valid prediction for GlimmerHMM_glimmerT_14514-T1
Valid prediction for GlimmerHMM_glimmerT_14501-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29939, rend_intergenic: 24204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39274, rend_intergenic: 35547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47358, rend_intergenic: 40370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50116, rend_intergenic: 48319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50423, rend_intergenic: 50216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51771, rend_intergenic: 50431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58102, rend_intergenic: 56753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59176, rend_intergenic: 58109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59776, rend_intergenic: 59310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62894, rend_intergenic: 59830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69024, rend_intergenic: 63384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72140, rend_intergenic: 70996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76826, rend_intergenic: 72192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81998, rend_intergenic: 78058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91856, rend_intergenic: 90792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105559, rend_intergenic: 99937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108253, rend_intergenic: 105867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118836, rend_intergenic: 118132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121013, rend_intergenic: 119183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127864, rend_intergenic: 122001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141508, rend_intergenic: 138150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152743, rend_intergenic: 146190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158716, rend_intergenic: 156180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161906, rend_intergenic: 159046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173287, rend_intergenic: 171107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179526, rend_intergenic: 177428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180451, rend_intergenic: 179587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186738, rend_intergenic: 180508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195850, rend_intergenic: 189266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208536, rend_intergenic: 203237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 210493
-exon list size: 954


building trellis

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41.9    
42.1    
42.2    
42.3    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.4    
44.5    
44.6    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
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45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.1    
50.2    
50.3    
50.4    
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50.6    
50.7    
50.8    
50.9    
51.0    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.4    
55.5    
55.6    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.7    
57.8    
57.9    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.3    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.6    
62.7    
62.8    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.9    
65.0    
65.1    
65.2    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.3    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 63 predictions from path traversal
Error with prediction: snap lend_intergenic: 29939, rend_intergenic: 24204  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39274, rend_intergenic: 35547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47358, rend_intergenic: 40370  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50116, rend_intergenic: 48319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 50423, rend_intergenic: 50216  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51771, rend_intergenic: 50431  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58102, rend_intergenic: 56753  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59176, rend_intergenic: 58109  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 59776, rend_intergenic: 59310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62894, rend_intergenic: 59830  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69024, rend_intergenic: 63384  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72140, rend_intergenic: 70996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76826, rend_intergenic: 72192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81998, rend_intergenic: 78058  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91856, rend_intergenic: 90792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105559, rend_intergenic: 99937  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108253, rend_intergenic: 105867  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118836, rend_intergenic: 118132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121013, rend_intergenic: 119183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127864, rend_intergenic: 122001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141508, rend_intergenic: 138150  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 152743, rend_intergenic: 146190  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158716, rend_intergenic: 156180  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161906, rend_intergenic: 159046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173287, rend_intergenic: 171107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179526, rend_intergenic: 177428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180451, rend_intergenic: 179587  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 186738, rend_intergenic: 180508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 195850, rend_intergenic: 189266  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 208536, rend_intergenic: 203237  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12753
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support