-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_17836743-18186839 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.3842-T1 Valid prediction for GlimmerHMM_glimmerT_16932-T1 Valid prediction for GeneMark_model.28380_t Valid prediction for GlimmerHMM_glimmerT_16895-T1 Valid prediction for snap_scaffold_6-snap.3781-T1 Valid prediction for Augustus_model.g11361.t1 Valid prediction for CodingQuarry_transcript_55271-T1 Valid prediction for GeneMark_model.28387_t Valid prediction for snap_scaffold_6-snap.3817-T1 Valid prediction for snap_scaffold_6-snap.3841-T1 Valid prediction for snap_scaffold_6-snap.3839-T1 Valid prediction for GeneMark_model.28297_t Valid prediction for GeneMark_model.28310_t Valid prediction for GlimmerHMM_glimmerT_16917-T1 Valid prediction for GeneMark_model.28341_t Valid prediction for GlimmerHMM_glimmerT_16900-T1 Valid prediction for snap_scaffold_6-snap.3846-T1 Couldn't classify 261913, 262227 Sorry, prediction pasa_asmbl_47761.p2 fails validation. (CCT) CT 261913-262227 CG AAC Valid prediction for GeneMark_model.28374_t Valid prediction for snap_scaffold_6-snap.3849-T1 Valid prediction for snap_scaffold_6-snap.3782-T1 Valid prediction for snap_scaffold_6-snap.3829-T1 Valid prediction for snap_scaffold_6-snap.3824-T1 Valid prediction for snap_scaffold_6-snap.3857-T1 Valid prediction for GeneMark_model.28345_t Valid prediction for snap_scaffold_6-snap.3836-T1 Valid prediction for GlimmerHMM_glimmerT_16903-T1 Valid prediction for GeneMark_model.28347_t Valid prediction for GlimmerHMM_glimmerT_16921-T1 Valid prediction for GeneMark_model.28285_t Valid prediction for GeneMark_model.28365_t Valid prediction for HiQ_model.g11379.t1 Valid prediction for GeneMark_model.28281_t Couldn't classify 58974, 59741 Sorry, prediction pasa_asmbl_47740.p1 fails validation. (CAG) CC 58974-59741 GG GAG Valid prediction for GeneMark_model.28307_t Valid prediction for GlimmerHMM_glimmerT_16933-T1 Valid prediction for GeneMark_model.28362_t Couldn't classify 10461, 10511 Couldn't classify 13704, 13762 Sorry, prediction pasa_asmbl_47731.p1 fails validation. (CCT) GT 10461-10511 GT CGG (GAG) AG 11009-11017 GT TGG (AGC) AG 11515-11673 GT AGG (GTG) AG 12305-12503 GT GGG (ATG) AG 13179-13259 GT AAG (TGG) AG 13704-13762 CT CCC -recovered pasa_asmbl_47731.p1, initial, 13179, 13259 -recovered pasa_asmbl_47731.p1, internal, 11009, 11017 -recovered pasa_asmbl_47731.p1, internal, 11515, 11673 -recovered pasa_asmbl_47731.p1, internal, 12305, 12503 -recovered pasa_asmbl_47731.p1, internal, 13179, 13259 Valid prediction for snap_scaffold_6-snap.3837-T1 Valid prediction for GeneMark_model.28376_t Valid prediction for GeneMark_model.28300_t Valid prediction for GeneMark_model.28354_t Valid prediction for snap_scaffold_6-snap.3860-T1 Valid prediction for snap_scaffold_6-snap.3778-T1 Valid prediction for GeneMark_model.28369_t Valid prediction for GeneMark_model.28314_t Valid prediction for HiQ_model.g11373.t1 Valid prediction for snap_scaffold_6-snap.3806-T1 Valid prediction for GeneMark_model.28330_t Valid prediction for snap_scaffold_6-snap.3851-T1 Valid prediction for snap_scaffold_6-snap.3850-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for Augustus_model.g11363.t1 Valid prediction for snap_scaffold_6-snap.3808-T1 Valid prediction for pasa_asmbl_47738.p1 Valid prediction for GeneMark_model.28317_t Valid prediction for snap_scaffold_6-snap.3776-T1 Valid prediction for GeneMark_model.28291_t Valid prediction for GlimmerHMM_glimmerT_16894-T1 Valid prediction for GeneMark_model.28311_t Valid prediction for GeneMark_model.28378_t Couldn't classify 259949, 260108 Sorry, prediction CodingQuarry_transcript_55277-T1 fails validation. (ATG) AA 247912-247942 GT TGG (CCT) AG 248289-248421 GT AAG (GTA) AG 248769-248893 GT AGG (AGC) AG 250817-250922 GT TGG (GAT) AG 252288-252451 GT AGG (ATA) AG 252622-252787 GT AGG (GAC) AG 253293-253399 GT GGG (AAA) AG 253576-253605 GT AGG (ACC) AG 253795-253934 GT CTG (GTG) AG 254249-254408 GT TGG (ATG) AG 254902-255006 GT AGG (GCT) AG 255240-255428 GT CGG (CTC) AG 256004-256138 GT AGG (AGG) AG 256236-256403 GT GGG (AGC) AG 257292-257380 GT AGG (GGC) AG 257948-258143 GT CGG (ACA) AG 259040-259179 GT AGG (GAG) CA 259949-260108 GT AGG (GCC) AG 260458-260594 GT AGG (CCC) AG 261973-262159 GT AGG (CCT) AG 262497-262528 GC GAG -recovered CodingQuarry_transcript_55277-T1, initial, 247912, 247942 add_exon() Sorry, CodingQuarry_transcript_55277-T1 254902-255006-initial-1 is invalid. -recovered CodingQuarry_transcript_55277-T1, initial, 254902, 255006 -recovered CodingQuarry_transcript_55277-T1, terminal, 262497, 262528 -recovered CodingQuarry_transcript_55277-T1, internal, 248289, 248421 -recovered CodingQuarry_transcript_55277-T1, internal, 248769, 248893 -recovered CodingQuarry_transcript_55277-T1, internal, 250817, 250922 -recovered CodingQuarry_transcript_55277-T1, internal, 252288, 252451 -recovered CodingQuarry_transcript_55277-T1, internal, 252622, 252787 -recovered CodingQuarry_transcript_55277-T1, internal, 253293, 253399 -recovered CodingQuarry_transcript_55277-T1, internal, 253576, 253605 -recovered CodingQuarry_transcript_55277-T1, internal, 253795, 253934 -recovered CodingQuarry_transcript_55277-T1, internal, 254249, 254408 -recovered CodingQuarry_transcript_55277-T1, internal, 254902, 255006 -recovered CodingQuarry_transcript_55277-T1, internal, 255240, 255428 -recovered CodingQuarry_transcript_55277-T1, internal, 256004, 256138 -recovered CodingQuarry_transcript_55277-T1, internal, 256236, 256403 -recovered CodingQuarry_transcript_55277-T1, internal, 257292, 257380 -recovered CodingQuarry_transcript_55277-T1, internal, 257948, 258143 -recovered CodingQuarry_transcript_55277-T1, internal, 259040, 259179 -recovered CodingQuarry_transcript_55277-T1, internal, 260458, 260594 -recovered CodingQuarry_transcript_55277-T1, internal, 261973, 262159 -recovered CodingQuarry_transcript_55277-T1, internal, 262497, 262528 Valid prediction for GeneMark_model.28371_t Valid prediction for GlimmerHMM_glimmerT_16930-T1 Valid prediction for GlimmerHMM_glimmerT_16936-T1 Valid prediction for GeneMark_model.28340_t Valid prediction for snap_scaffold_6-snap.3853-T1 Valid prediction for snap_scaffold_6-snap.3786-T1 Valid prediction for GeneMark_model.28276_t Valid prediction for snap_scaffold_6-snap.3812-T1 Valid prediction for snap_scaffold_6-snap.3859-T1 Valid prediction for GlimmerHMM_glimmerT_16925-T1 Valid prediction for GlimmerHMM_glimmerT_16926-T1 Valid prediction for Augustus_model.g11378.t1 Valid prediction for GeneMark_model.28367_t Valid prediction for snap_scaffold_6-snap.3832-T1 Valid prediction for GlimmerHMM_glimmerT_16928-T1 Valid prediction for GeneMark_model.28338_t Valid prediction for snap_scaffold_6-snap.3809-T1 Sorry, intron length (3) is less than minimum required (10) Couldn't classify 224629, 224754 Couldn't classify 224957, 225022 Sorry, prediction CodingQuarry_transcript_55275-T1 fails validation. (ATG) AG 224629-224754 GA ATG (GAG) AT 224957-225022 AG GAA Valid prediction for GeneMark_model.28284_t Valid prediction for Augustus_model.g11357.t1 Valid prediction for pasa_asmbl_47741.p1 Valid prediction for GeneMark_model.28328_t Valid prediction for GeneMark_model.28308_t Valid prediction for snap_scaffold_6-snap.3852-T1 Valid prediction for snap_scaffold_6-snap.3796-T1 Valid prediction for snap_scaffold_6-snap.3825-T1 Valid prediction for GeneMark_model.28350_t Valid prediction for GlimmerHMM_glimmerT_16935-T1 Valid prediction for GlimmerHMM_glimmerT_16923-T1 Couldn't classify 5822, 5959 Sorry, prediction pasa_asmbl_47728.p1 fails validation. (GAC) CA 5822-5959 GT AGG (GCT) AG 6415-6648 GT AGG (GCG) AG 6997-7230 GT AGG (GCG) AG 7793-8359 GT ACG (GCT) AG 8857-8994 AG GAA -recovered pasa_asmbl_47728.p1, terminal, 8857, 8994 -recovered pasa_asmbl_47728.p1, internal, 6415, 6648 -recovered pasa_asmbl_47728.p1, internal, 6997, 7230 -recovered pasa_asmbl_47728.p1, internal, 7793, 8359 Valid prediction for snap_scaffold_6-snap.3861-T1 Valid prediction for GlimmerHMM_glimmerT_16890-T1 Valid prediction for pasa_asmbl_47732.p1 Valid prediction for GeneMark_model.28352_t Valid prediction for Augustus_model.g11362.t1 Valid prediction for GeneMark_model.28293_t Valid prediction for GeneMark_model.28385_t Valid prediction for snap_scaffold_6-snap.3797-T1 Valid prediction for GeneMark_model.28360_t Valid prediction for Augustus_model.g11356.t1 Valid prediction for snap_scaffold_6-snap.3801-T1 Valid prediction for GeneMark_model.28332_t Valid prediction for GeneMark_model.28358_t Couldn't classify 24655, 24678 Sorry, prediction GeneMark_model.28278_t fails validation. (GAG) AG 24655-24678 GT GGG (GAG) AG 24707-24718 GT GGG (AGA) AG 24974-25018 GT GAG (GGT) AG 27989-28030 GT AGG (TGG) AG 28053-28103 GT GGG (ACT) AG 28126-28143 GT GGG (GGG) AG 28169-28219 GT GAG (GAG) AG 28259-28343 GT AGG (CTC) AG 30133-30173 GT GAG (GGT) AG 30672-30692 GT GGG (GAA) AG 30718-30838 AA GAA -recovered GeneMark_model.28278_t, terminal, 24974, 25018 -recovered GeneMark_model.28278_t, terminal, 30133, 30173 -recovered GeneMark_model.28278_t, terminal, 30718, 30838 -recovered GeneMark_model.28278_t, internal, 24655, 24678 -recovered GeneMark_model.28278_t, internal, 24707, 24718 -recovered GeneMark_model.28278_t, internal, 24974, 25018 -recovered GeneMark_model.28278_t, internal, 27989, 28030 -recovered GeneMark_model.28278_t, internal, 28053, 28103 -recovered GeneMark_model.28278_t, internal, 28126, 28143 -recovered GeneMark_model.28278_t, internal, 28169, 28219 -recovered GeneMark_model.28278_t, internal, 28259, 28343 -recovered GeneMark_model.28278_t, internal, 30133, 30173 -recovered GeneMark_model.28278_t, internal, 30672, 30692 Valid prediction for GeneMark_model.28299_t Valid prediction for GeneMark_model.28303_t Valid prediction for GeneMark_model.28343_t Valid prediction for snap_scaffold_6-snap.3855-T1 Valid prediction for snap_scaffold_6-snap.3834-T1 Valid prediction for GlimmerHMM_glimmerT_16889-T1 Valid prediction for GeneMark_model.28363_t Valid prediction for Augustus_model.g11367.t1 Valid prediction for GeneMark_model.28322_t Valid prediction for snap_scaffold_6-snap.3791-T1 Valid prediction for CodingQuarry_transcript_55267-T1 Valid prediction for GeneMark_model.28289_t Valid prediction for GeneMark_model.28336_t Valid prediction for GeneMark_model.28295_t Valid prediction for GlimmerHMM_glimmerT_16937-T1 Valid prediction for GlimmerHMM_glimmerT_16914-T1 Valid prediction for GeneMark_model.28280_t Valid prediction for Augustus_model.g11366.t1 Valid prediction for GlimmerHMM_glimmerT_16907-T1 Valid prediction for snap_scaffold_6-snap.3814-T1 Valid prediction for GeneMark_model.28312_t Valid prediction for Augustus_model.g11380.t1 Valid prediction for GeneMark_model.28356_t Valid prediction for snap_scaffold_6-snap.3787-T1 Valid prediction for GeneMark_model.28346_t Valid prediction for GeneMark_model.28287_t Valid prediction for snap_scaffold_6-snap.3793-T1 Couldn't classify 3614, 3751 Couldn't classify 4793, 4993 Sorry, prediction pasa_asmbl_47879.p1 fails validation. (GCT) AG 3614-3751 GT GAG (TCT) AG 4793-4993 CA CAC -recovered pasa_asmbl_47879.p1, internal, 3614, 3751 Valid prediction for snap_scaffold_6-snap.3807-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.28383_t Couldn't classify 15781, 15789 Sorry, prediction GeneMark_model.28277_t fails validation. (ATG) AA 10119-10367 GT AGG (AGC) AG 11515-11673 GT AGG (GTG) AG 12305-12503 GT GGG (ATG) AG 13179-13259 GT AAG (TGG) AG 13704-14530 GT CGG (AAG) AG 14578-14612 GT AGG (GTT) AG 15310-15318 GT AAG (AGA) AG 15781-15789 GT GAG -recovered GeneMark_model.28277_t, initial, 10119, 10367 -recovered GeneMark_model.28277_t, initial, 13179, 13259 -recovered GeneMark_model.28277_t, internal, 11515, 11673 -recovered GeneMark_model.28277_t, internal, 12305, 12503 -recovered GeneMark_model.28277_t, internal, 13179, 13259 -recovered GeneMark_model.28277_t, internal, 13704, 14530 -recovered GeneMark_model.28277_t, internal, 14578, 14612 -recovered GeneMark_model.28277_t, internal, 15310, 15318 -recovered GeneMark_model.28277_t, internal, 15781, 15789 Valid prediction for snap_scaffold_6-snap.3803-T1 Couldn't classify 246552, 246607 Sorry, prediction pasa_asmbl_47758.p1 fails validation. (GGT) GA 246552-246607 GT AGG (AGA) AG 247770-247942 GT TGG (CCT) AG 248289-248421 GT AAG (GTA) AG 248769-248893 GT AGG (AGC) AG 250817-250922 GT TGG (GAT) AG 252288-252451 GT AGG (ATA) AG 252622-252787 GT AGG (GAC) AG 253293-253399 GT GGG (AAA) AG 253576-253605 GT AGG (ACC) AG 253795-253934 GT CTG (GTG) AG 254249-254408 GT TGG (ATG) AG 254902-255006 GT AGG (GCT) AG 255240-255487 GA AAG add_exon() Sorry, pasa_asmbl_47758.p1 254902-255006-initial-1 is invalid. -recovered pasa_asmbl_47758.p1, initial, 254902, 255006 -recovered pasa_asmbl_47758.p1, terminal, 255240, 255487 -recovered pasa_asmbl_47758.p1, internal, 247770, 247942 -recovered pasa_asmbl_47758.p1, internal, 248289, 248421 -recovered pasa_asmbl_47758.p1, internal, 248769, 248893 -recovered pasa_asmbl_47758.p1, internal, 250817, 250922 -recovered pasa_asmbl_47758.p1, internal, 252288, 252451 -recovered pasa_asmbl_47758.p1, internal, 252622, 252787 -recovered pasa_asmbl_47758.p1, internal, 253293, 253399 -recovered pasa_asmbl_47758.p1, internal, 253576, 253605 -recovered pasa_asmbl_47758.p1, internal, 253795, 253934 -recovered pasa_asmbl_47758.p1, internal, 254249, 254408 -recovered pasa_asmbl_47758.p1, internal, 254902, 255006 Valid prediction for snap_scaffold_6-snap.3794-T1 Valid prediction for GeneMark_model.28348_t Valid prediction for GeneMark_model.28334_t Valid prediction for snap_scaffold_6-snap.3831-T1 Valid prediction for GeneMark_model.28320_t Valid prediction for GeneMark_model.28326_t Valid prediction for GlimmerHMM_glimmerT_16924-T1 Valid prediction for GeneMark_model.28305_t Valid prediction for snap_scaffold_6-snap.3822-T1 Valid prediction for GeneMark_model.28282_t Valid prediction for snap_scaffold_6-snap.3848-T1 Valid prediction for snap_scaffold_6-snap.3789-T1 Valid prediction for snap_scaffold_6-snap.3820-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Couldn't classify 190477, 190527 Sorry, prediction pasa_asmbl_49154.p1 fails validation. (ATG) GG 188899-189015 GT TGG (GAC) AG 189257-189364 GT AGG (AAT) AG 189777-189909 GT GAG (GCC) AG 190297-190400 GT CGG (GCC) AG 190477-190527 GG ACG -recovered pasa_asmbl_49154.p1, initial, 188899, 189015 -recovered pasa_asmbl_49154.p1, internal, 189257, 189364 -recovered pasa_asmbl_49154.p1, internal, 189777, 189909 -recovered pasa_asmbl_49154.p1, internal, 190297, 190400 Valid prediction for GeneMark_model.28386_t Valid prediction for GeneMark_model.28325_t Valid prediction for GeneMark_model.28304_t Valid prediction for CodingQuarry_transcript_55268-T1 Valid prediction for GeneMark_model.28316_t Couldn't classify 1575, 1730 Sorry, prediction pasa_asmbl_49164.p1 fails validation. (ATC) CG 1575-1730 GT TGG (TCT) AG 3081-3229 GT GAG (GTA) AG 3319-3364 GT ATG (TAC) AG 3682-3806 GT CAG (GTT) AG 3931-4029 GT ATG (AGG) AG 5625-5745 GT ATG (AGA) AG 6004-6163 GT CTG (TAT) AG 6271-6392 GT AGG (GCT) AG 6760-6835 GT CTG (TCC) AG 7089-7360 GT TGG (CCT) AG 7595-7687 GT AGG (AAG) AG 8728-8813 GT CTG (GAA) AG 9125-9182 GT TGG (ACG) AG 9374-9481 GT TTG (GCA) AG 11090-11263 GT CGG (CTG) AG 11902-12009 GT AGG (ATG) AG 14306-14476 GT CAG (CAG) AG 15735-15855 GT AGG (GCC) AG 17606-17709 CC GAC -recovered pasa_asmbl_49164.p1, initial, 14306, 14476 add_exon() Sorry, pasa_asmbl_49164.p1 3081-3229-terminal-2 is invalid. -recovered pasa_asmbl_49164.p1, terminal, 3081, 3229 -recovered pasa_asmbl_49164.p1, terminal, 17606, 17709 -recovered pasa_asmbl_49164.p1, internal, 3081, 3229 -recovered pasa_asmbl_49164.p1, internal, 3319, 3364 -recovered pasa_asmbl_49164.p1, internal, 3682, 3806 -recovered pasa_asmbl_49164.p1, internal, 3931, 4029 -recovered pasa_asmbl_49164.p1, internal, 5625, 5745 -recovered pasa_asmbl_49164.p1, internal, 6004, 6163 -recovered pasa_asmbl_49164.p1, internal, 6271, 6392 -recovered pasa_asmbl_49164.p1, internal, 6760, 6835 -recovered pasa_asmbl_49164.p1, internal, 7089, 7360 -recovered pasa_asmbl_49164.p1, internal, 7595, 7687 -recovered pasa_asmbl_49164.p1, internal, 8728, 8813 -recovered pasa_asmbl_49164.p1, internal, 9125, 9182 -recovered pasa_asmbl_49164.p1, internal, 9374, 9481 -recovered pasa_asmbl_49164.p1, internal, 11090, 11263 -recovered pasa_asmbl_49164.p1, internal, 11902, 12009 -recovered pasa_asmbl_49164.p1, internal, 14306, 14476 -recovered pasa_asmbl_49164.p1, internal, 15735, 15855 Valid prediction for GlimmerHMM_glimmerT_16910-T1 Valid prediction for snap_scaffold_6-snap.3833-T1 Valid prediction for snap_scaffold_6-snap.3785-T1 Valid prediction for GlimmerHMM_glimmerT_16918-T1 Valid prediction for Augustus_model.g11358.t1 Valid prediction for snap_scaffold_6-snap.3840-T1 Valid prediction for Augustus_model.g11375.t1 Valid prediction for GeneMark_model.28286_t Valid prediction for GeneMark_model.28319_t Valid prediction for snap_scaffold_6-snap.3810-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.28342_t Valid prediction for Augustus_model.g11359.t1 Valid prediction for GeneMark_model.28372_t Valid prediction for snap_scaffold_6-snap.3823-T1 Valid prediction for Augustus_model.g11383.t1 Valid prediction for pasa_asmbl_49145.p1 Couldn't classify 160207, 160234 Sorry, prediction pasa_asmbl_49159.p1 fails validation. (GGG) CA 160207-160234 GT AGG (AAA) AG 161556-161618 GT ACG (ACT) AG 161740-161879 GT AGG (GTG) AG 162264-162668 CA AAC -recovered pasa_asmbl_49159.p1, terminal, 162264, 162668 -recovered pasa_asmbl_49159.p1, internal, 161556, 161618 -recovered pasa_asmbl_49159.p1, internal, 161740, 161879 Valid prediction for GeneMark_model.28377_t Valid prediction for GlimmerHMM_glimmerT_16899-T1 Valid prediction for GeneMark_model.28368_t Valid prediction for Augustus_model.g11369.t1 Valid prediction for GlimmerHMM_glimmerT_16893-T1 Valid prediction for GeneMark_model.28283_t Valid prediction for GeneMark_model.28290_t Valid prediction for Augustus_model.g11376.t1 Valid prediction for GeneMark_model.28357_t Valid prediction for GeneMark_model.28329_t Valid prediction for GeneMark_model.28296_t Valid prediction for GlimmerHMM_glimmerT_16901-T1 Valid prediction for GlimmerHMM_glimmerT_16916-T1 Valid prediction for snap_scaffold_6-snap.3827-T1 Valid prediction for GeneMark_model.28318_t Valid prediction for snap_scaffold_6-snap.3819-T1 Valid prediction for GeneMark_model.28327_t Valid prediction for GlimmerHMM_glimmerT_16931-T1 Valid prediction for GlimmerHMM_glimmerT_16915-T1 Valid prediction for GlimmerHMM_glimmerT_16892-T1 Valid prediction for snap_scaffold_6-snap.3830-T1 Valid prediction for snap_scaffold_6-snap.3788-T1 Valid prediction for HiQ_model.g11360.t1 Valid prediction for GeneMark_model.28375_t Valid prediction for Augustus_model.g11377.t1 Valid prediction for GlimmerHMM_glimmerT_16922-T1 Valid prediction for GeneMark_model.28344_t Valid prediction for snap_scaffold_6-snap.3856-T1 Valid prediction for GeneMark_model.28324_t Valid prediction for GlimmerHMM_glimmerT_16905-T1 Valid prediction for snap_scaffold_6-snap.3844-T1 Valid prediction for GeneMark_model.28313_t Valid prediction for GeneMark_model.28309_t Valid prediction for GeneMark_model.28294_t Valid prediction for GlimmerHMM_glimmerT_16920-T1 Valid prediction for GeneMark_model.28302_t Valid prediction for GlimmerHMM_glimmerT_16896-T1 Valid prediction for GeneMark_model.28301_t Valid prediction for snap_scaffold_6-snap.3845-T1 Valid prediction for GeneMark_model.28337_t Valid prediction for GlimmerHMM_glimmerT_16919-T1 Valid prediction for snap_scaffold_6-snap.3780-T1 Valid prediction for snap_scaffold_6-snap.3835-T1 Valid prediction for GlimmerHMM_glimmerT_16927-T1 Valid prediction for GeneMark_model.28384_t Valid prediction for GeneMark_model.28373_t Valid prediction for GeneMark_model.28379_t Valid prediction for GeneMark_model.28359_t Valid prediction for Augustus_model.g11368.t1 Valid prediction for GlimmerHMM_glimmerT_16898-T1 Valid prediction for GlimmerHMM_glimmerT_16904-T1 Valid prediction for GlimmerHMM_glimmerT_16913-T1 Valid prediction for CodingQuarry_transcript_55272-T1 Valid prediction for snap_scaffold_6-snap.3816-T1 Valid prediction for GeneMark_model.28370_t Valid prediction for Augustus_model.g11382.t1 Valid prediction for GlimmerHMM_glimmerT_16938-T1 Valid prediction for HiQ_model.g11372.t1 Valid prediction for GlimmerHMM_glimmerT_16912-T1 Valid prediction for GeneMark_model.28355_t Valid prediction for GeneMark_model.28364_t Valid prediction for GeneMark_model.28323_t Valid prediction for GeneMark_model.28366_t Valid prediction for snap_scaffold_6-snap.3798-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GeneMark_model.28306_t Valid prediction for snap_scaffold_6-snap.3792-T1 Valid prediction for GeneMark_model.28292_t Couldn't classify 117279, 118094 Sorry, prediction pasa_asmbl_47747.p1 fails validation. (NNN) NN 117279-118094 AT GAA Valid prediction for Augustus_model.g11364.t1 Valid prediction for GlimmerHMM_glimmerT_16908-T1 Valid prediction for snap_scaffold_6-snap.3811-T1 Couldn't classify 133621, 133725 Sorry, prediction pasa_asmbl_49161.p1 fails validation. (GTC) CA 133621-133725 GT GGG (ACT) AG 134139-134205 GT TGG (ATG) AG 134292-134404 GT AGG (GAG) AG 134482-134595 GT CAG (TGT) AG 135521-135705 GT GCG (GCC) AG 136250-136343 GT ACG (TGG) AG 138937-139041 TC GAT add_exon() Sorry, pasa_asmbl_49161.p1 134292-134404-initial-1 is invalid. -recovered pasa_asmbl_49161.p1, initial, 134292, 134404 -recovered pasa_asmbl_49161.p1, terminal, 138937, 139041 -recovered pasa_asmbl_49161.p1, internal, 134139, 134205 -recovered pasa_asmbl_49161.p1, internal, 134292, 134404 -recovered pasa_asmbl_49161.p1, internal, 134482, 134595 -recovered pasa_asmbl_49161.p1, internal, 135521, 135705 -recovered pasa_asmbl_49161.p1, internal, 136250, 136343 Valid prediction for snap_scaffold_6-snap.3777-T1 Valid prediction for snap_scaffold_6-snap.3800-T1 Valid prediction for GeneMark_model.28351_t Valid prediction for GeneMark_model.28288_t Valid prediction for GeneMark_model.28382_t Valid prediction for snap_scaffold_6-snap.3838-T1 Valid prediction for GeneMark_model.28333_t Valid prediction for Augustus_model.g11374.t1 Valid prediction for GeneMark_model.28349_t Valid prediction for GeneMark_model.28353_t Valid prediction for snap_scaffold_6-snap.3847-T1 Valid prediction for GlimmerHMM_glimmerT_16909-T1 Valid prediction for GlimmerHMM_glimmerT_16897-T1 Valid prediction for snap_scaffold_6-snap.3784-T1 Valid prediction for CodingQuarry_transcript_55273-T1 Valid prediction for GeneMark_model.28315_t Valid prediction for Augustus_model.g11371.t1 Valid prediction for snap_scaffold_6-snap.3802-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for snap_scaffold_6-snap.3828-T1 Valid prediction for GlimmerHMM_glimmerT_16929-T1 Valid prediction for snap_scaffold_6-snap.3854-T1 Valid prediction for Augustus_model.g11381.t1 Valid prediction for GeneMark_model.28331_t Valid prediction for snap_scaffold_6-snap.3858-T1 Valid prediction for GeneMark_model.28381_t Valid prediction for GlimmerHMM_glimmerT_16911-T1 Valid prediction for snap_scaffold_6-snap.3818-T1 Valid prediction for GlimmerHMM_glimmerT_16902-T1 Valid prediction for snap_scaffold_6-snap.3795-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for snap_scaffold_6-snap.3783-T1 Valid prediction for CodingQuarry_transcript_55269-T1 Valid prediction for GeneMark_model.28321_t Valid prediction for GeneMark_model.28298_t Valid prediction for snap_scaffold_6-snap.3821-T1 Valid prediction for GeneMark_model.28335_t Valid prediction for snap_scaffold_6-snap.3804-T1 Valid prediction for GeneMark_model.28361_t Valid prediction for CodingQuarry_transcript_55274-T1 Valid prediction for snap_scaffold_6-snap.3843-T1 Sorry, intron length (9) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_16934-T1 Valid prediction for snap_scaffold_6-snap.3815-T1 Valid prediction for snap_scaffold_6-snap.3813-T1 Valid prediction for HiQ_model.g11370.t1 Valid prediction for snap_scaffold_6-snap.3826-T1 Valid prediction for GlimmerHMM_glimmerT_16891-T1 Valid prediction for GlimmerHMM_glimmerT_16906-T1 Valid prediction for snap_scaffold_6-snap.3799-T1 Valid prediction for Augustus_model.g11365.t1 Valid prediction for GeneMark_model.28279_t Valid prediction for HiQ_model.g11384.t1 Valid prediction for snap_scaffold_6-snap.3779-T1 Valid prediction for snap_scaffold_6-snap.3805-T1 Valid prediction for snap_scaffold_6-snap.3790-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8954, rend_intergenic: 2887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25948, rend_intergenic: 10137 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37503, rend_intergenic: 33458 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38967, rend_intergenic: 37510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55022, rend_intergenic: 48287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66200, rend_intergenic: 56215 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74073, rend_intergenic: 67916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76313, rend_intergenic: 74322 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84890, rend_intergenic: 81036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91690, rend_intergenic: 84894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97260, rend_intergenic: 91978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110296, rend_intergenic: 101370 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110420, rend_intergenic: 110395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113758, rend_intergenic: 111438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114386, rend_intergenic: 113865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141522, rend_intergenic: 119100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149285, rend_intergenic: 142069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155999, rend_intergenic: 153492 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157575, rend_intergenic: 156165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161199, rend_intergenic: 158481 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170902, rend_intergenic: 166671 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179026, rend_intergenic: 171036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186191, rend_intergenic: 182922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195259, rend_intergenic: 189186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204937, rend_intergenic: 195810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214405, rend_intergenic: 205410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241786, rend_intergenic: 225882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 243593, rend_intergenic: 242268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254616, rend_intergenic: 245963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255487, rend_intergenic: 254831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258070, rend_intergenic: 256030 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263367, rend_intergenic: 258999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270235, rend_intergenic: 266074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 290835, rend_intergenic: 270933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 295403, rend_intergenic: 293956 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322257, rend_intergenic: 299451 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 330368, rend_intergenic: 326573 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332261, rend_intergenic: 332115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 335801, rend_intergenic: 332389 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346993, rend_intergenic: 336452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 350097 -exon list size: 1868 building trellis 0.1 0.1 0.2 0.2 0.3 0.3 0.4 0.4 0.5 0.5 0.6 0.6 0.7 0.7 0.8 0.9 0.9 1.0 1.0 1.1 1.1 1.2 1.2 1.3 1.3 1.4 1.4 1.5 1.6 1.6 1.7 1.7 1.8 1.8 1.9 1.9 2.0 2.0 2.1 2.1 2.2 2.2 2.3 2.4 2.4 2.5 2.5 2.6 2.6 2.7 2.7 2.8 2.8 2.9 2.9 3.0 3.0 3.1 3.2 3.2 3.3 3.3 3.4 3.4 3.5 3.5 3.6 3.6 3.7 3.7 3.8 3.9 3.9 4.0 4.0 4.1 4.1 4.2 4.2 4.3 4.3 4.4 4.4 4.5 4.5 4.6 4.7 4.7 4.8 4.8 4.9 4.9 5.0 5.0 5.1 5.1 5.2 5.2 5.3 5.3 5.4 5.5 5.5 5.6 5.6 5.7 5.7 5.8 5.8 5.9 5.9 6.0 6.0 6.1 6.1 6.2 6.3 6.3 6.4 6.4 6.5 6.5 6.6 6.6 6.7 6.7 6.8 6.8 6.9 7.0 7.0 7.1 7.1 7.2 7.2 7.3 7.3 7.4 7.4 7.5 7.5 7.6 7.6 7.7 7.8 7.8 7.9 7.9 8.0 8.0 8.1 8.1 8.2 8.2 8.3 8.3 8.4 8.4 8.5 8.6 8.6 8.7 8.7 8.8 8.8 8.9 8.9 9.0 9.0 9.1 9.1 9.2 9.3 9.3 9.4 9.4 9.5 9.5 9.6 9.6 9.7 9.7 9.8 9.8 9.9 9.9 10.0 10.1 10.1 10.2 10.2 10.3 10.3 10.4 10.4 10.5 10.5 10.6 10.6 10.7 10.7 10.8 10.9 10.9 11.0 11.0 11.1 11.1 11.2 11.2 11.3 11.3 11.4 11.4 11.5 11.6 11.6 11.7 11.7 11.8 11.8 11.9 11.9 12.0 12.0 12.1 12.1 12.2 12.2 12.3 12.4 12.4 12.5 12.5 12.6 12.6 12.7 12.7 12.8 12.8 12.9 12.9 13.0 13.0 13.1 13.2 13.2 13.3 13.3 13.4 13.4 13.5 13.5 13.6 13.6 13.7 13.7 13.8 13.9 13.9 14.0 14.0 14.1 14.1 14.2 14.2 14.3 14.3 14.4 14.4 14.5 14.5 14.6 14.7 14.7 14.8 14.8 14.9 14.9 15.0 15.0 15.1 15.1 15.2 15.2 15.3 15.3 15.4 15.5 15.5 15.6 15.6 15.7 15.7 15.8 15.8 15.9 15.9 16.0 16.0 16.1 16.1 16.2 16.3 16.3 16.4 16.4 16.5 16.5 16.6 16.6 16.7 16.7 16.8 16.8 16.9 17.0 17.0 17.1 17.1 17.2 17.2 17.3 17.3 17.4 17.4 17.5 17.5 17.6 17.6 17.7 17.8 17.8 17.9 17.9 18.0 18.0 18.1 18.1 18.2 18.2 18.3 18.3 18.4 18.4 18.5 18.6 18.6 18.7 18.7 18.8 18.8 18.9 18.9 19.0 19.0 19.1 19.1 19.2 19.3 19.3 19.4 19.4 19.5 19.5 19.6 19.6 19.7 19.7 19.8 19.8 19.9 19.9 20.0 20.1 20.1 20.2 20.2 20.3 20.3 20.4 20.4 20.5 20.5 20.6 20.6 20.7 20.7 20.8 20.9 20.9 21.0 21.0 21.1 21.1 21.2 21.2 21.3 21.3 21.4 21.4 21.5 21.6 21.6 21.7 21.7 21.8 21.8 21.9 21.9 22.0 22.0 22.1 22.1 22.2 22.2 22.3 22.4 22.4 22.5 22.5 22.6 22.6 22.7 22.7 22.8 22.8 22.9 22.9 23.0 23.0 23.1 23.2 23.2 23.3 23.3 23.4 23.4 23.5 23.5 23.6 23.6 23.7 23.7 23.8 23.9 23.9 24.0 24.0 24.1 24.1 24.2 24.2 24.3 24.3 24.4 24.4 24.5 24.5 24.6 24.7 24.7 24.8 24.8 24.9 24.9 25.0 25.0 25.1 25.1 25.2 25.2 25.3 25.3 25.4 25.5 25.5 25.6 25.6 25.7 25.7 25.8 25.8 25.9 25.9 26.0 26.0 26.1 26.1 26.2 26.3 26.3 26.4 26.4 26.5 26.5 26.6 26.6 26.7 26.7 26.8 26.8 26.9 27.0 27.0 27.1 27.1 27.2 27.2 27.3 27.3 27.4 27.4 27.5 27.5 27.6 27.6 27.7 27.8 27.8 27.9 27.9 28.0 28.0 28.1 28.1 28.2 28.2 28.3 28.3 28.4 28.4 28.5 28.6 28.6 28.7 28.7 28.8 28.8 28.9 28.9 29.0 29.0 29.1 29.1 29.2 29.3 29.3 29.4 29.4 29.5 29.5 29.6 29.6 29.7 29.7 29.8 29.8 29.9 29.9 30.0 30.1 30.1 30.2 30.2 30.3 30.3 30.4 30.4 30.5 30.5 30.6 30.6 30.7 30.7 30.8 30.9 30.9 31.0 31.0 31.1 31.1 31.2 31.2 31.3 31.3 31.4 31.4 31.5 31.6 31.6 31.7 31.7 31.8 31.8 31.9 31.9 32.0 32.0 32.1 32.1 32.2 32.2 32.3 32.4 32.4 32.5 32.5 32.6 32.6 32.7 32.7 32.8 32.8 32.9 32.9 33.0 33.0 33.1 33.2 33.2 33.3 33.3 33.4 33.4 33.5 33.5 33.6 33.6 33.7 33.7 33.8 33.9 33.9 34.0 34.0 34.1 34.1 34.2 34.2 34.3 34.3 34.4 34.4 34.5 34.5 34.6 34.7 34.7 34.8 34.8 34.9 34.9 35.0 35.0 35.1 35.1 35.2 35.2 35.3 35.3 35.4 35.5 35.5 35.6 35.6 35.7 35.7 35.8 35.8 35.9 35.9 36.0 36.0 36.1 36.1 36.2 36.3 36.3 36.4 36.4 36.5 36.5 36.6 36.6 36.7 36.7 36.8 36.8 36.9 37.0 37.0 37.1 37.1 37.2 37.2 37.3 37.3 37.4 37.4 37.5 37.5 37.6 37.6 37.7 37.8 37.8 37.9 37.9 38.0 38.0 38.1 38.1 38.2 38.2 38.3 38.3 38.4 38.4 38.5 38.6 38.6 38.7 38.7 38.8 38.8 38.9 38.9 39.0 39.0 39.1 39.1 39.2 39.3 39.3 39.4 39.4 39.5 39.5 39.6 39.6 39.7 39.7 39.8 39.8 39.9 39.9 40.0 40.1 40.1 40.2 40.2 40.3 40.3 40.4 40.4 40.5 40.5 40.6 40.6 40.7 40.7 40.8 40.9 40.9 41.0 41.0 41.1 41.1 41.2 41.2 41.3 41.3 41.4 41.4 41.5 41.6 41.6 41.7 41.7 41.8 41.8 41.9 41.9 42.0 42.0 42.1 42.1 42.2 42.2 42.3 42.4 42.4 42.5 42.5 42.6 42.6 42.7 42.7 42.8 42.8 42.9 42.9 43.0 43.0 43.1 43.2 43.2 43.3 43.3 43.4 43.4 43.5 43.5 43.6 43.6 43.7 43.7 43.8 43.9 43.9 44.0 44.0 44.1 44.1 44.2 44.2 44.3 44.3 44.4 44.4 44.5 44.5 44.6 44.7 44.7 44.8 44.8 44.9 44.9 45.0 45.0 45.1 45.1 45.2 45.2 45.3 45.3 45.4 45.5 45.5 45.6 45.6 45.7 45.7 45.8 45.8 45.9 45.9 46.0 46.0 46.1 46.1 46.2 46.3 46.3 46.4 46.4 46.5 46.5 46.6 46.6 46.7 46.7 46.8 46.8 46.9 47.0 47.0 47.1 47.1 47.2 47.2 47.3 47.3 47.4 47.4 47.5 47.5 47.6 47.6 47.7 47.8 47.8 47.9 47.9 48.0 48.0 48.1 48.1 48.2 48.2 48.3 48.3 48.4 48.4 48.5 48.6 48.6 48.7 48.7 48.8 48.8 48.9 48.9 49.0 49.0 49.1 49.1 49.2 49.3 49.3 49.4 49.4 49.5 49.5 49.6 49.6 49.7 49.7 49.8 49.8 49.9 49.9 50.0 50.1 50.1 50.2 50.2 50.3 50.3 50.4 50.4 50.5 50.5 50.6 50.6 50.7 50.7 50.8 50.9 50.9 51.0 51.0 51.1 51.1 51.2 51.2 51.3 51.3 51.4 51.4 51.5 51.6 51.6 51.7 51.7 51.8 51.8 51.9 51.9 52.0 52.0 52.1 52.1 52.2 52.2 52.3 52.4 52.4 52.5 52.5 52.6 52.6 52.7 52.7 52.8 52.8 52.9 52.9 53.0 53.0 53.1 53.2 53.2 53.3 53.3 53.4 53.4 53.5 53.5 53.6 53.6 53.7 53.7 53.8 53.9 53.9 54.0 54.0 54.1 54.1 54.2 54.2 54.3 54.3 54.4 54.4 54.5 54.5 54.6 54.7 54.7 54.8 54.8 54.9 54.9 55.0 55.0 55.1 55.1 55.2 55.2 55.3 55.3 55.4 55.5 55.5 55.6 55.6 55.7 55.7 55.8 55.8 55.9 55.9 56.0 56.0 56.1 56.1 56.2 56.3 56.3 56.4 56.4 56.5 56.5 56.6 56.6 56.7 56.7 56.8 56.8 56.9 57.0 57.0 57.1 57.1 57.2 57.2 57.3 57.3 57.4 57.4 57.5 57.5 57.6 57.6 57.7 57.8 57.8 57.9 57.9 58.0 58.0 58.1 58.1 58.2 58.2 58.3 58.3 58.4 58.4 58.5 58.6 58.6 58.7 58.7 58.8 58.8 58.9 58.9 59.0 59.0 59.1 59.1 59.2 59.3 59.3 59.4 59.4 59.5 59.5 59.6 59.6 59.7 59.7 59.8 59.8 59.9 59.9 60.0 60.1 60.1 60.2 60.2 60.3 60.3 60.4 60.4 60.5 60.5 60.6 60.6 60.7 60.7 60.8 60.9 60.9 61.0 61.0 61.1 61.1 61.2 61.2 61.3 61.3 61.4 61.4 61.5 61.6 61.6 61.7 61.7 61.8 61.8 61.9 61.9 62.0 62.0 62.1 62.1 62.2 62.2 62.3 62.4 62.4 62.5 62.5 62.6 62.6 62.7 62.7 62.8 62.8 62.9 62.9 63.0 63.0 63.1 63.2 63.2 63.3 63.3 63.4 63.4 63.5 63.5 63.6 63.6 63.7 63.7 63.8 63.9 63.9 64.0 64.0 64.1 64.1 64.2 64.2 64.3 64.3 64.4 64.4 64.5 64.5 64.6 64.7 64.7 64.8 64.8 64.9 64.9 65.0 65.0 65.1 65.1 65.2 65.2 65.3 65.3 65.4 65.5 65.5 65.6 65.6 65.7 65.7 65.8 65.8 65.9 65.9 66.0 66.0 66.1 66.1 66.2 66.3 66.3 66.4 66.4 66.5 66.5 66.6 66.6 66.7 66.7 66.8 66.8 66.9 67.0 67.0 67.1 67.1 67.2 67.2 67.3 67.3 67.4 67.4 67.5 67.5 67.6 67.6 67.7 67.8 67.8 67.9 67.9 68.0 68.0 68.1 68.1 68.2 68.2 68.3 68.3 68.4 68.4 68.5 68.6 68.6 68.7 68.7 68.8 68.8 68.9 68.9 69.0 69.0 69.1 69.1 69.2 69.3 69.3 69.4 69.4 69.5 69.5 69.6 69.6 69.7 69.7 69.8 69.8 69.9 69.9 70.0 70.1 70.1 70.2 70.2 70.3 70.3 70.4 70.4 70.5 70.5 70.6 70.6 70.7 70.7 70.8 70.9 70.9 71.0 71.0 71.1 71.1 71.2 71.2 71.3 71.3 71.4 71.4 71.5 71.6 71.6 71.7 71.7 71.8 71.8 71.9 71.9 72.0 72.0 72.1 72.1 72.2 72.2 72.3 72.4 72.4 72.5 72.5 72.6 72.6 72.7 72.7 72.8 72.8 72.9 72.9 73.0 73.0 73.1 73.2 73.2 73.3 73.3 73.4 73.4 73.5 73.5 73.6 73.6 73.7 73.7 73.8 73.9 73.9 74.0 74.0 74.1 74.1 74.2 74.2 74.3 74.3 74.4 74.4 74.5 74.5 74.6 74.7 74.7 74.8 74.8 74.9 74.9 75.0 75.0 75.1 75.1 75.2 75.2 75.3 75.3 75.4 75.5 75.5 75.6 75.6 75.7 75.7 75.8 75.8 75.9 75.9 76.0 76.0 76.1 76.1 76.2 76.3 76.3 76.4 76.4 76.5 76.5 76.6 76.6 76.7 76.7 76.8 76.8 76.9 77.0 77.0 77.1 77.1 77.2 77.2 77.3 77.3 77.4 77.4 77.5 77.5 77.6 77.6 77.7 77.8 77.8 77.9 77.9 78.0 78.0 78.1 78.1 78.2 78.2 78.3 78.3 78.4 78.4 78.5 78.6 78.6 78.7 78.7 78.8 78.8 78.9 78.9 79.0 79.0 79.1 79.1 79.2 79.3 79.3 79.4 79.4 79.5 79.5 79.6 79.6 79.7 79.7 79.8 79.8 79.9 79.9 80.0 80.1 80.1 80.2 80.2 80.3 80.3 80.4 80.4 80.5 80.5 80.6 80.6 80.7 80.7 80.8 80.9 80.9 81.0 81.0 81.1 81.1 81.2 81.2 81.3 81.3 81.4 81.4 81.5 81.6 81.6 81.7 81.7 81.8 81.8 81.9 81.9 82.0 82.0 82.1 82.1 82.2 82.2 82.3 82.4 82.4 82.5 82.5 82.6 82.6 82.7 82.7 82.8 82.8 82.9 82.9 83.0 83.0 83.1 83.2 83.2 83.3 83.3 83.4 83.4 83.5 83.5 83.6 83.6 83.7 83.7 83.8 83.9 83.9 84.0 84.0 84.1 84.1 84.2 84.2 84.3 84.3 84.4 84.4 84.5 84.5 84.6 84.7 84.7 84.8 84.8 84.9 84.9 85.0 85.0 85.1 85.1 85.2 85.2 85.3 85.3 85.4 85.5 85.5 85.6 85.6 85.7 85.7 85.8 85.8 85.9 85.9 86.0 86.0 86.1 86.1 86.2 86.3 86.3 86.4 86.4 86.5 86.5 86.6 86.6 86.7 86.7 86.8 86.8 86.9 87.0 87.0 87.1 87.1 87.2 87.2 87.3 87.3 87.4 87.4 87.5 87.5 87.6 87.6 87.7 87.8 87.8 87.9 87.9 88.0 88.0 88.1 88.1 88.2 88.2 88.3 88.3 88.4 88.4 88.5 88.6 88.6 88.7 88.7 88.8 88.8 88.9 88.9 89.0 89.0 89.1 89.1 89.2 89.3 89.3 89.4 89.4 89.5 89.5 89.6 89.6 89.7 89.7 89.8 89.8 89.9 89.9 90.0 90.1 90.1 90.2 90.2 90.3 90.3 90.4 90.4 90.5 90.5 90.6 90.6 90.7 90.7 90.8 90.9 90.9 91.0 91.0 91.1 91.1 91.2 91.2 91.3 91.3 91.4 91.4 91.5 91.6 91.6 91.7 91.7 91.8 91.8 91.9 91.9 92.0 92.0 92.1 92.1 92.2 92.2 92.3 92.4 92.4 92.5 92.5 92.6 92.6 92.7 92.7 92.8 92.8 92.9 92.9 93.0 93.0 93.1 93.2 93.2 93.3 93.3 93.4 93.4 93.5 93.5 93.6 93.6 93.7 93.7 93.8 93.9 93.9 94.0 94.0 94.1 94.1 94.2 94.2 94.3 94.3 94.4 94.4 94.5 94.5 94.6 94.7 94.7 94.8 94.8 94.9 94.9 95.0 95.0 95.1 95.1 95.2 95.2 95.3 95.3 95.4 95.5 95.5 95.6 95.6 95.7 95.7 95.8 95.8 95.9 95.9 96.0 96.0 96.1 96.1 96.2 96.3 96.3 96.4 96.4 96.5 96.5 96.6 96.6 96.7 96.7 96.8 96.8 96.9 97.0 97.0 97.1 97.1 97.2 97.2 97.3 97.3 97.4 97.4 97.5 97.5 97.6 97.6 97.7 97.8 97.8 97.9 97.9 98.0 98.0 98.1 98.1 98.2 98.2 98.3 98.3 98.4 98.4 98.5 98.6 98.6 98.7 98.7 98.8 98.8 98.9 98.9 99.0 99.0 99.1 99.1 99.2 99.3 99.3 99.4 99.4 99.5 99.5 99.6 99.6 99.7 99.7 99.8 99.8 99.9 99.9 -found 64 predictions from path traversal Error with prediction: snap lend_intergenic: 8954, rend_intergenic: 2887 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 25948, rend_intergenic: 10137 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37503, rend_intergenic: 33458 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 38967, rend_intergenic: 37510 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 55022, rend_intergenic: 48287 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66200, rend_intergenic: 56215 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 74073, rend_intergenic: 67916 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 76313, rend_intergenic: 74322 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 84890, rend_intergenic: 81036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 91690, rend_intergenic: 84894 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 97260, rend_intergenic: 91978 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110296, rend_intergenic: 101370 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 110420, rend_intergenic: 110395 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 113758, rend_intergenic: 111438 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 114386, rend_intergenic: 113865 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141522, rend_intergenic: 119100 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149285, rend_intergenic: 142069 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 155999, rend_intergenic: 153492 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 157575, rend_intergenic: 156165 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 161199, rend_intergenic: 158481 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170902, rend_intergenic: 166671 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 179026, rend_intergenic: 171036 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 186191, rend_intergenic: 182922 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 195259, rend_intergenic: 189186 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 204937, rend_intergenic: 195810 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 214405, rend_intergenic: 205410 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 241786, rend_intergenic: 225882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 243593, rend_intergenic: 242268 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 254616, rend_intergenic: 245963 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 255487, rend_intergenic: 254831 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 258070, rend_intergenic: 256030 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 263367, rend_intergenic: 258999 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 270235, rend_intergenic: 266074 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 290835, rend_intergenic: 270933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 295403, rend_intergenic: 293956 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 322257, rend_intergenic: 299451 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 330368, rend_intergenic: 326573 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 332261, rend_intergenic: 332115 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 335801, rend_intergenic: 332389 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 346993, rend_intergenic: 336452 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 34 predictions persist after filtering for low support