-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_151333-415964 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g9510.t1 Valid prediction for GeneMark_model.23706_t Valid prediction for snap_scaffold_6-snap.53-T1 Valid prediction for GeneMark_model.23784_t Valid prediction for HiQ_model.g9498.t1 Valid prediction for GlimmerHMM_glimmerT_14214-T1 Valid prediction for GlimmerHMM_glimmerT_14238-T1 Valid prediction for GeneMark_model.23722_t Valid prediction for CodingQuarry_transcript_54750-T1 Valid prediction for GeneMark_model.23777_t Valid prediction for snap_scaffold_6-snap.75-T1 Valid prediction for CodingQuarry_transcript_54751-T1 Valid prediction for GeneMark_model.23724_t Valid prediction for snap_scaffold_6-snap.78-T1 Valid prediction for snap_scaffold_6-snap.86-T1 Valid prediction for GeneMark_model.23725_t Valid prediction for GeneMark_model.23773_t Valid prediction for GeneMark_model.23753_t Valid prediction for GeneMark_model.23786_t Valid prediction for snap_scaffold_6-snap.71-T1 Valid prediction for GeneMark_model.23746_t Valid prediction for snap_scaffold_6-snap.51-T1 Valid prediction for snap_scaffold_6-snap.85-T1 Valid prediction for pasa_asmbl_46604.p1 Valid prediction for snap_scaffold_6-snap.82-T1 Valid prediction for snap_scaffold_6-snap.61-T1 Couldn't classify 3735, 3792 Couldn't classify 4749, 4756 Sorry, prediction pasa_asmbl_46588.p1 fails validation. (CAC) CA 3735-3792 GT AGG (ATC) AG 3949-4061 GT AGG (CCA) AG 4476-4650 GT AGG (CTC) AG 4749-4756 AA CAA -recovered pasa_asmbl_46588.p1, internal, 3949, 4061 -recovered pasa_asmbl_46588.p1, internal, 4476, 4650 Valid prediction for pasa_asmbl_46608.p1 Valid prediction for GlimmerHMM_glimmerT_14222-T1 Valid prediction for snap_scaffold_6-snap.63-T1 Valid prediction for GlimmerHMM_glimmerT_14223-T1 Valid prediction for Augustus_model.g9506.t1 Valid prediction for GeneMark_model.23729_t Couldn't classify 249167, 249247 Sorry, prediction pasa_asmbl_46609.p1 fails validation. (ATG) CT 245874-245966 GT AGG (GTG) AG 246637-246782 GT AGG (GTA) AG 247641-247756 GT AGG (GTT) AG 248791-248951 GT AGG (GTG) AG 249167-249247 GG CAG -recovered pasa_asmbl_46609.p1, initial, 245874, 245966 -recovered pasa_asmbl_46609.p1, internal, 246637, 246782 -recovered pasa_asmbl_46609.p1, internal, 247641, 247756 -recovered pasa_asmbl_46609.p1, internal, 248791, 248951 Valid prediction for snap_scaffold_6-snap.80-T1 Couldn't classify 89951, 90139 Sorry, prediction pasa_asmbl_46596.p1 fails validation. (ATG) AG 89026-89089 GT AGG (GTC) AG 89426-89571 GT AGG (CCC) AG 89951-90139 CA CCC -recovered pasa_asmbl_46596.p1, initial, 89026, 89089 -recovered pasa_asmbl_46596.p1, internal, 89026, 89089 -recovered pasa_asmbl_46596.p1, internal, 89426, 89571 Valid prediction for GeneMark_model.23785_t Valid prediction for snap_scaffold_6-snap.52-T1 Valid prediction for snap_scaffold_6-snap.43-T1 Valid prediction for GeneMark_model.23735_t Valid prediction for GeneMark_model.23719_t Valid prediction for GeneMark_model.23755_t Valid prediction for GlimmerHMM_glimmerT_14229-T1 Valid prediction for HiQ_model.g9516.t1 Valid prediction for GeneMark_model.23714_t Valid prediction for GeneMark_model.23716_t Valid prediction for GeneMark_model.23741_t Valid prediction for GeneMark_model.23727_t Valid prediction for GeneMark_model.23744_t Valid prediction for snap_scaffold_6-snap.74-T1 Valid prediction for snap_scaffold_6-snap.54-T1 Couldn't classify 34225, 34331 Sorry, prediction pasa_asmbl_46591.p3 fails validation. (ATC) GG 34225-34331 GT AGG (ACT) AG 34854-34951 GT AGG (GTT) AG 35200-35312 TG GAT -recovered pasa_asmbl_46591.p3, terminal, 35200, 35312 -recovered pasa_asmbl_46591.p3, internal, 34854, 34951 Couldn't classify 10196, 10358 Couldn't classify 13738, 13999 Sorry, prediction pasa_asmbl_47914.p1 fails validation. (TGC) AG 10196-10358 GT CGG (GCG) AG 10711-10889 GT AGG (TTT) AG 11653-11795 GT AGG (ATC) AG 12071-12189 GT AGG (GTG) AG 12275-12402 GT AGG (GTG) AG 12557-12654 GT AGG (AGT) AG 12800-12932 GT TGG (ATA) AG 13045-13259 GT AGG (GGT) AG 13738-13999 AC ACA -recovered pasa_asmbl_47914.p1, internal, 10196, 10358 -recovered pasa_asmbl_47914.p1, internal, 10711, 10889 -recovered pasa_asmbl_47914.p1, internal, 11653, 11795 -recovered pasa_asmbl_47914.p1, internal, 12071, 12189 -recovered pasa_asmbl_47914.p1, internal, 12275, 12402 -recovered pasa_asmbl_47914.p1, internal, 12557, 12654 -recovered pasa_asmbl_47914.p1, internal, 12800, 12932 -recovered pasa_asmbl_47914.p1, internal, 13045, 13259 Valid prediction for GeneMark_model.23766_t Valid prediction for CodingQuarry_transcript_54749-T1 Valid prediction for Augustus_model.g9495.t1 Valid prediction for GeneMark_model.23737_t Couldn't classify 29036, 29107 Sorry, prediction pasa_asmbl_46589.p1 fails validation. (ATG) CC 25761-25834 GT ACG (GTC) AG 26711-26793 GT TAG (TGG) AG 27721-27890 GT AGG (AGG) AG 28019-28115 GT AGG (GTC) AG 28383-28480 GT TGG (AGA) AG 28840-28932 GT AGG (GGA) AG 29036-29107 TA GGT -recovered pasa_asmbl_46589.p1, initial, 25761, 25834 -recovered pasa_asmbl_46589.p1, internal, 26711, 26793 -recovered pasa_asmbl_46589.p1, internal, 27721, 27890 -recovered pasa_asmbl_46589.p1, internal, 28019, 28115 -recovered pasa_asmbl_46589.p1, internal, 28383, 28480 -recovered pasa_asmbl_46589.p1, internal, 28840, 28932 Valid prediction for Augustus_model.g9499.t1 Valid prediction for GeneMark_model.23779_t Couldn't classify 3081, 3198 Sorry, prediction pasa_asmbl_47836.p1 fails validation. (ATG) GA 1841-1881 GT CGG (GGA) AG 2862-2999 GT ATG (ACT) AG 3081-3198 CA GAC -recovered pasa_asmbl_47836.p1, initial, 1841, 1881 -recovered pasa_asmbl_47836.p1, internal, 2862, 2999 Valid prediction for GeneMark_model.23731_t Valid prediction for GeneMark_model.23760_t Valid prediction for GeneMark_model.23768_t Couldn't classify 90731, 91504 Couldn't classify 92283, 92444 Sorry, prediction pasa_asmbl_46597.p1 fails validation. (CCT) AG 90731-91504 GT TGG (TTG) AG 91831-91907 GT GTG (TGT) AG 92017-92116 GT AGG (GTG) AG 92283-92444 GT AGG -recovered pasa_asmbl_46597.p1, internal, 90731, 91504 -recovered pasa_asmbl_46597.p1, internal, 91831, 91907 -recovered pasa_asmbl_46597.p1, internal, 92017, 92116 -recovered pasa_asmbl_46597.p1, internal, 92283, 92444 Valid prediction for GeneMark_model.23712_t Valid prediction for HiQ_model.g9494.t1 Valid prediction for GeneMark_model.23708_t Valid prediction for snap_scaffold_6-snap.47-T1 Valid prediction for GeneMark_model.23751_t Valid prediction for GeneMark_model.23757_t Valid prediction for GlimmerHMM_glimmerT_14215-T1 Valid prediction for GeneMark_model.23748_t Valid prediction for GeneMark_model.23782_t Valid prediction for snap_scaffold_6-snap.91-T1 Valid prediction for GeneMark_model.23780_t Valid prediction for GeneMark_model.23733_t Valid prediction for Augustus_model.g9492.t1 Valid prediction for GlimmerHMM_glimmerT_14225-T1 Valid prediction for CodingQuarry_transcript_54757-T1 Valid prediction for GeneMark_model.23771_t Valid prediction for GlimmerHMM_glimmerT_14227-T1 Valid prediction for GeneMark_model.23775_t Valid prediction for GeneMark_model.23710_t Couldn't classify 76774, 76811 Couldn't classify 80740, 80785 Sorry, prediction pasa_asmbl_46593.p1 fails validation. (AGT) AG 76774-76811 GT CTG (ATA) AG 77421-77554 GT CTG (ACC) AG 78111-78176 GT AGG (TGA) AG 78771-78846 GT GGG (CGA) AG 79319-79506 GT TGG (AAC) AG 79719-79803 GT AGG (GGA) AG 80240-80386 GT AGG (TCA) AG 80740-80785 CA GTC add_exon() Sorry, pasa_asmbl_46593.p1 78111-78176-terminal-1 is invalid. -recovered pasa_asmbl_46593.p1, terminal, 78111, 78176 -recovered pasa_asmbl_46593.p1, internal, 76774, 76811 -recovered pasa_asmbl_46593.p1, internal, 77421, 77554 -recovered pasa_asmbl_46593.p1, internal, 78111, 78176 -recovered pasa_asmbl_46593.p1, internal, 78771, 78846 -recovered pasa_asmbl_46593.p1, internal, 79319, 79506 -recovered pasa_asmbl_46593.p1, internal, 79719, 79803 -recovered pasa_asmbl_46593.p1, internal, 80240, 80386 Valid prediction for GeneMark_model.23749_t Valid prediction for snap_scaffold_6-snap.64-T1 Valid prediction for Augustus_model.g9517.t1 Couldn't classify 256228, 256351 Sorry, prediction pasa_asmbl_46611.p1 fails validation. (GGG) CA 256228-256351 GT CGG (GAG) AG 256573-256689 GT AGG (GTG) AG 256954-257064 GT AGG (GCA) AG 257194-257366 AG AGA -recovered pasa_asmbl_46611.p1, terminal, 257194, 257366 -recovered pasa_asmbl_46611.p1, internal, 256573, 256689 -recovered pasa_asmbl_46611.p1, internal, 256954, 257064 Valid prediction for GeneMark_model.23739_t Couldn't classify 102080, 102177 Couldn't classify 104946, 105067 Sorry, prediction pasa_asmbl_46598.p1 fails validation. (GAG) AG 102080-102177 GT TTG (TGA) AG 103233-103455 GT CGG (CAA) AG 104116-104185 GT AGG (AGA) AG 104946-105067 GG TCG -recovered pasa_asmbl_46598.p1, internal, 102080, 102177 -recovered pasa_asmbl_46598.p1, internal, 103233, 103455 -recovered pasa_asmbl_46598.p1, internal, 104116, 104185 Valid prediction for GeneMark_model.23742_t Valid prediction for CodingQuarry_transcript_54748-T1 Valid prediction for GlimmerHMM_glimmerT_14228-T1 Valid prediction for snap_scaffold_6-snap.83-T1 Valid prediction for snap_scaffold_6-snap.89-T1 Valid prediction for GlimmerHMM_glimmerT_14234-T1 Valid prediction for Augustus_model.g9501.t1 Valid prediction for Augustus_model.g9504.t1 Valid prediction for GlimmerHMM_glimmerT_14242-T1 Valid prediction for GlimmerHMM_glimmerT_14243-T1 Valid prediction for GlimmerHMM_glimmerT_14218-T1 Valid prediction for GeneMark_model.23762_t Valid prediction for HiQ_model.g9505.t1 Valid prediction for CodingQuarry_transcript_54754-T1 Valid prediction for snap_scaffold_6-snap.67-T1 Couldn't classify 80843, 80959 Sorry, prediction pasa_asmbl_46594.p1 fails validation. (GTG) CT 80843-80959 GT AGG (GAG) AG 81782-81885 GT AGG (GGA) AG 81973-82087 GT CTG (GAC) AG 82694-82872 GT CTG (GGA) AG 83634-83771 GT AGG (GCT) AG 84016-84136 GT AGG (CTG) AG 84368-84569 GT GGG (GTT) AG 84870-84954 GT TGG (TTT) AG 85062-85161 CA GAC -recovered pasa_asmbl_46594.p1, terminal, 85062, 85161 -recovered pasa_asmbl_46594.p1, internal, 81782, 81885 -recovered pasa_asmbl_46594.p1, internal, 81973, 82087 -recovered pasa_asmbl_46594.p1, internal, 82694, 82872 -recovered pasa_asmbl_46594.p1, internal, 83634, 83771 -recovered pasa_asmbl_46594.p1, internal, 84016, 84136 -recovered pasa_asmbl_46594.p1, internal, 84368, 84569 -recovered pasa_asmbl_46594.p1, internal, 84870, 84954 Valid prediction for snap_scaffold_6-snap.69-T1 Valid prediction for snap_scaffold_6-snap.58-T1 Valid prediction for snap_scaffold_6-snap.72-T1 Valid prediction for HiQ_model.g9513.t1 Valid prediction for GlimmerHMM_glimmerT_14224-T1 Valid prediction for snap_scaffold_6-snap.49-T1 Valid prediction for GlimmerHMM_glimmerT_14241-T1 Valid prediction for snap_scaffold_6-snap.66-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_14235-T1 Valid prediction for GeneMark_model.23761_t Valid prediction for GeneMark_model.23769_t Valid prediction for snap_scaffold_6-snap.48-T1 Valid prediction for Augustus_model.g9511.t1 Valid prediction for GeneMark_model.23720_t Valid prediction for GlimmerHMM_glimmerT_14237-T1 Valid prediction for GeneMark_model.23709_t Valid prediction for GlimmerHMM_glimmerT_14231-T1 Couldn't classify 140514, 141512 Sorry, prediction pasa_asmbl_47972.p1 fails validation. (CAA) AG 140514-141512 TG TGT Valid prediction for Augustus_model.g9518.t1 Valid prediction for snap_scaffold_6-snap.81-T1 Valid prediction for snap_scaffold_6-snap.59-T1 Valid prediction for HiQ_model.g9515.t1 Valid prediction for GeneMark_model.23759_t Valid prediction for snap_scaffold_6-snap.55-T1 Valid prediction for CodingQuarry_transcript_54755-T1 Valid prediction for GeneMark_model.23783_t Valid prediction for GlimmerHMM_glimmerT_14219-T1 Valid prediction for snap_scaffold_6-snap.92-T1 Valid prediction for snap_scaffold_6-snap.68-T1 Valid prediction for Augustus_model.g9508.t1 Valid prediction for GeneMark_model.23740_t Valid prediction for GeneMark_model.23707_t Valid prediction for GeneMark_model.23781_t Valid prediction for GeneMark_model.23745_t Valid prediction for snap_scaffold_6-snap.90-T1 Valid prediction for snap_scaffold_6-snap.60-T1 Valid prediction for snap_scaffold_6-snap.73-T1 Valid prediction for snap_scaffold_6-snap.77-T1 Valid prediction for GlimmerHMM_glimmerT_14221-T1 Valid prediction for GeneMark_model.23787_t Valid prediction for Augustus_model.g9502.t1 Valid prediction for snap_scaffold_6-snap.70-T1 Valid prediction for GeneMark_model.23747_t Valid prediction for GeneMark_model.23750_t Valid prediction for GlimmerHMM_glimmerT_14220-T1 Couldn't classify 244414, 244497 Sorry, prediction pasa_asmbl_47971.p1 fails validation. (AGG) GC 244414-244497 GT GGG (TTT) AG 245986-246146 GT CGG (GAG) AG 247069-247143 GT TGG (GTT) AG 247465-247566 GT AGG (GTT) AG 248596-248665 GT TGG (GTG) AG 248769-248969 CT GAC -recovered pasa_asmbl_47971.p1, terminal, 248769, 248969 -recovered pasa_asmbl_47971.p1, internal, 245986, 246146 -recovered pasa_asmbl_47971.p1, internal, 247069, 247143 -recovered pasa_asmbl_47971.p1, internal, 247465, 247566 -recovered pasa_asmbl_47971.p1, internal, 248596, 248665 Valid prediction for HiQ_model.g9493.t1 Valid prediction for GeneMark_model.23778_t Valid prediction for Augustus_model.g9512.t1 Valid prediction for GeneMark_model.23752_t Valid prediction for GeneMark_model.23717_t Valid prediction for snap_scaffold_6-snap.88-T1 Couldn't classify 91975, 92185 Sorry, prediction pasa_asmbl_49274.p1 fails validation. (AGA) CC 91975-92185 GT CAG (ACT) AG 92266-92480 CC GAC -recovered pasa_asmbl_49274.p1, terminal, 92266, 92480 Valid prediction for GeneMark_model.23738_t Valid prediction for Augustus_model.g9507.t1 Valid prediction for snap_scaffold_6-snap.56-T1 Valid prediction for snap_scaffold_6-snap.50-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_6-snap.65-T1 Valid prediction for snap_scaffold_6-snap.57-T1 Valid prediction for snap_scaffold_6-snap.46-T1 Valid prediction for GeneMark_model.23721_t Valid prediction for GeneMark_model.23713_t Valid prediction for Augustus_model.g9509.t1 Valid prediction for CodingQuarry_transcript_54756-T1 Valid prediction for GeneMark_model.23765_t Valid prediction for GeneMark_model.23718_t Valid prediction for GeneMark_model.23774_t Valid prediction for snap_scaffold_6-snap.79-T1 Valid prediction for Augustus_model.g9497.t1 Valid prediction for snap_scaffold_6-snap.45-T1 Valid prediction for GeneMark_model.23758_t Valid prediction for CodingQuarry_transcript_54747-T1 Valid prediction for GlimmerHMM_glimmerT_14230-T1 Valid prediction for snap_scaffold_6-snap.84-T1 Valid prediction for GeneMark_model.23770_t Valid prediction for Augustus_model.g9500.t1 Valid prediction for GlimmerHMM_glimmerT_14216-T1 Valid prediction for Augustus_model.g9503.t1 Couldn't classify 3170, 3526 Sorry, prediction pasa_asmbl_47980.p1 fails validation. (CAA) AC 3170-3526 GC TGG Couldn't classify 2408, 2893 Sorry, prediction pasa_asmbl_47981.p1 fails validation. (AAC) CC 2408-2893 GG GGG Valid prediction for CodingQuarry_transcript_54746-T1 Valid prediction for GeneMark_model.23736_t Valid prediction for GeneMark_model.23754_t Valid prediction for GeneMark_model.23723_t Valid prediction for GeneMark_model.23732_t Valid prediction for pasa_asmbl_47977.p1 Valid prediction for GeneMark_model.23756_t Valid prediction for GeneMark_model.23715_t Couldn't classify 97741, 98037 Couldn't classify 101299, 102629 Sorry, prediction pasa_asmbl_47974.p1 fails validation. (ACA) AG 97741-98037 GT AGG (AAG) AG 98198-98404 GT AGG (TGT) AG 98873-99011 GT TGG (CTC) AG 99529-99646 GT ATG (ATA) AG 99771-99846 GT CTG (ATC) AG 100125-100233 GT CGG (GAA) AG 100378-100494 GT GTG (GTG) AG 100692-100841 GT TGG (GGC) AG 101299-102629 TC AGT -recovered pasa_asmbl_47974.p1, internal, 97741, 98037 -recovered pasa_asmbl_47974.p1, internal, 98198, 98404 -recovered pasa_asmbl_47974.p1, internal, 98873, 99011 -recovered pasa_asmbl_47974.p1, internal, 99529, 99646 -recovered pasa_asmbl_47974.p1, internal, 99771, 99846 -recovered pasa_asmbl_47974.p1, internal, 100125, 100233 -recovered pasa_asmbl_47974.p1, internal, 100378, 100494 -recovered pasa_asmbl_47974.p1, internal, 100692, 100841 Valid prediction for GlimmerHMM_glimmerT_14226-T1 Valid prediction for snap_scaffold_6-snap.76-T1 Valid prediction for GlimmerHMM_glimmerT_14244-T1 Valid prediction for GlimmerHMM_glimmerT_14232-T1 Valid prediction for GlimmerHMM_glimmerT_14240-T1 Couldn't classify 77179, 77541 Sorry, prediction pasa_asmbl_49247.p2 fails validation. (GAC) GG 77179-77541 CG GCC Valid prediction for snap_scaffold_6-snap.87-T1 Valid prediction for GlimmerHMM_glimmerT_14236-T1 Valid prediction for GeneMark_model.23763_t Valid prediction for GeneMark_model.23734_t Valid prediction for GeneMark_model.23730_t Valid prediction for GeneMark_model.23776_t Valid prediction for Augustus_model.g9514.t1 Valid prediction for GeneMark_model.23728_t Valid prediction for GeneMark_model.23726_t Couldn't classify 102726, 103076 Sorry, prediction pasa_asmbl_49347.p1 fails validation. (CAG) AG 102726-103076 GT AGG (CGT) AG 104669-104905 GT AGG (AAC) AG 105440-105514 GT AGG (CGG) AG 106029-106235 AC GAA -recovered pasa_asmbl_49347.p1, terminal, 106029, 106235 -recovered pasa_asmbl_49347.p1, internal, 102726, 103076 -recovered pasa_asmbl_49347.p1, internal, 104669, 104905 -recovered pasa_asmbl_49347.p1, internal, 105440, 105514 Valid prediction for GeneMark_model.23711_t Valid prediction for GeneMark_model.23767_t Valid prediction for Augustus_model.g9496.t1 Valid prediction for snap_scaffold_6-snap.44-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_6-snap.62-T1 Valid prediction for GlimmerHMM_glimmerT_14217-T1 Couldn't classify 89959, 90093 Couldn't classify 91186, 91408 Sorry, prediction pasa_asmbl_47975.p1 fails validation. (AGC) TG 89959-90093 GT CGG (TTG) AG 90391-90521 GT CAG (TGA) AG 90995-91102 GT AGG (GCT) AG 91186-91408 GT AGG -recovered pasa_asmbl_47975.p1, internal, 90391, 90521 -recovered pasa_asmbl_47975.p1, internal, 90995, 91102 -recovered pasa_asmbl_47975.p1, internal, 91186, 91408 Valid prediction for GeneMark_model.23772_t Valid prediction for CodingQuarry_transcript_54753-T1 Valid prediction for GlimmerHMM_glimmerT_14233-T1 Valid prediction for GeneMark_model.23743_t Valid prediction for GlimmerHMM_glimmerT_14239-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23422, rend_intergenic: 2929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35312, rend_intergenic: 26738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35898, rend_intergenic: 35312 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49955, rend_intergenic: 36271 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62298, rend_intergenic: 50262 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86981, rend_intergenic: 67267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102758, rend_intergenic: 91732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112912, rend_intergenic: 103207 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141028, rend_intergenic: 113867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142302, rend_intergenic: 142110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144955, rend_intergenic: 142340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154242, rend_intergenic: 149673 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176320, rend_intergenic: 156879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177273, rend_intergenic: 176706 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193649, rend_intergenic: 178375 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196004, rend_intergenic: 194066 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201061, rend_intergenic: 197819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215200, rend_intergenic: 213476 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225352, rend_intergenic: 215795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232256, rend_intergenic: 226125 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237330, rend_intergenic: 235233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 257709, rend_intergenic: 245934 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 105337, rend_intergenic: 105334 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 264632 -exon list size: 1175 building trellis 0.1 0.2 0.3 0.3 0.4 0.5 0.6 0.7 0.8 0.8 0.9 1.0 1.1 1.2 1.3 1.4 1.4 1.5 1.6 1.7 1.8 1.9 2.0 2.0 2.1 2.2 2.3 2.4 2.5 2.5 2.6 2.7 2.8 2.9 3.0 3.1 3.1 3.2 3.3 3.4 3.5 3.6 3.7 3.7 3.8 3.9 4.0 4.1 4.2 4.2 4.3 4.4 4.5 4.6 4.7 4.8 4.8 4.9 5.0 5.1 5.2 5.3 5.4 5.4 5.5 5.6 5.7 5.8 5.9 5.9 6.0 6.1 6.2 6.3 6.4 6.5 6.5 6.6 6.7 6.8 6.9 7.0 7.1 7.1 7.2 7.3 7.4 7.5 7.6 7.6 7.7 7.8 7.9 8.0 8.1 8.2 8.2 8.3 8.4 8.5 8.6 8.7 8.8 8.8 8.9 9.0 9.1 9.2 9.3 9.3 9.4 9.5 9.6 9.7 9.8 9.9 9.9 10.0 10.1 10.2 10.3 10.4 10.5 10.5 10.6 10.7 10.8 10.9 11.0 11.0 11.1 11.2 11.3 11.4 11.5 11.6 11.6 11.7 11.8 11.9 12.0 12.1 12.1 12.2 12.3 12.4 12.5 12.6 12.7 12.7 12.8 12.9 13.0 13.1 13.2 13.3 13.3 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.3 14.4 14.4 14.5 14.6 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 16.0 16.1 16.1 16.2 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.6 17.7 17.8 17.8 17.9 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.8 18.9 18.9 19.0 19.1 19.2 19.3 19.4 19.5 19.5 19.6 19.7 19.8 19.9 20.0 20.1 20.1 20.2 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 21.0 21.1 21.2 21.2 21.3 21.4 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.2 22.3 22.3 22.4 22.5 22.6 22.7 22.8 22.9 22.9 23.0 23.1 23.2 23.3 23.4 23.4 23.5 23.6 23.7 23.8 23.9 24.0 24.0 24.1 24.2 24.3 24.4 24.5 24.6 24.6 24.7 24.8 24.9 25.0 25.1 25.1 25.2 25.3 25.4 25.5 25.6 25.7 25.7 25.8 25.9 26.0 26.1 26.2 26.3 26.3 26.4 26.5 26.6 26.7 26.8 26.8 26.9 27.0 27.1 27.2 27.3 27.4 27.4 27.5 27.6 27.7 27.8 27.9 28.0 28.0 28.1 28.2 28.3 28.4 28.5 28.5 28.6 28.7 28.8 28.9 29.0 29.1 29.1 29.2 29.3 29.4 29.5 29.6 29.7 29.7 29.8 29.9 30.0 30.1 30.2 30.2 30.3 30.4 30.5 30.6 30.7 30.8 30.8 30.9 31.0 31.1 31.2 31.3 31.4 31.4 31.5 31.6 31.7 31.8 31.9 31.9 32.0 32.1 32.2 32.3 32.4 32.5 32.5 32.6 32.7 32.8 32.9 33.0 33.1 33.1 33.2 33.3 33.4 33.5 33.6 33.6 33.7 33.8 33.9 34.0 34.1 34.2 34.2 34.3 34.4 34.5 34.6 34.7 34.7 34.8 34.9 35.0 35.1 35.2 35.3 35.3 35.4 35.5 35.6 35.7 35.8 35.9 35.9 36.0 36.1 36.2 36.3 36.4 36.4 36.5 36.6 36.7 36.8 36.9 37.0 37.0 37.1 37.2 37.3 37.4 37.5 37.6 37.6 37.7 37.8 37.9 38.0 38.1 38.1 38.2 38.3 38.4 38.5 38.6 38.7 38.7 38.8 38.9 39.0 39.1 39.2 39.3 39.3 39.4 39.5 39.6 39.7 39.8 39.8 39.9 40.0 40.1 40.2 40.3 40.4 40.4 40.5 40.6 40.7 40.8 40.9 41.0 41.0 41.1 41.2 41.3 41.4 41.5 41.5 41.6 41.7 41.8 41.9 42.0 42.1 42.1 42.2 42.3 42.4 42.5 42.6 42.7 42.7 42.8 42.9 43.0 43.1 43.2 43.2 43.3 43.4 43.5 43.6 43.7 43.8 43.8 43.9 44.0 44.1 44.2 44.3 44.4 44.4 44.5 44.6 44.7 44.8 44.9 44.9 45.0 45.1 45.2 45.3 45.4 45.5 45.5 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.4 46.5 46.6 46.6 46.7 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.7 47.8 47.9 48.0 48.1 48.2 48.3 48.3 48.4 48.5 48.6 48.7 48.8 48.9 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.9 50.0 50.0 50.1 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.1 51.2 51.3 51.4 51.5 51.6 51.7 51.7 51.8 51.9 52.0 52.1 52.2 52.3 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.3 53.4 53.4 53.5 53.6 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.5 54.5 54.6 54.7 54.8 54.9 55.0 55.1 55.1 55.2 55.3 55.4 55.5 55.6 55.6 55.7 55.8 55.9 56.0 56.1 56.2 56.2 56.3 56.4 56.5 56.6 56.7 56.8 56.8 56.9 57.0 57.1 57.2 57.3 57.3 57.4 57.5 57.6 57.7 57.8 57.9 57.9 58.0 58.1 58.2 58.3 58.4 58.5 58.5 58.6 58.7 58.8 58.9 59.0 59.0 59.1 59.2 59.3 59.4 59.5 59.6 59.6 59.7 59.8 59.9 60.0 60.1 60.2 60.2 60.3 60.4 60.5 60.6 60.7 60.7 60.8 60.9 61.0 61.1 61.2 61.3 61.3 61.4 61.5 61.6 61.7 61.8 61.9 61.9 62.0 62.1 62.2 62.3 62.4 62.4 62.5 62.6 62.7 62.8 62.9 63.0 63.0 63.1 63.2 63.3 63.4 63.5 63.6 63.6 63.7 63.8 63.9 64.0 64.1 64.1 64.2 64.3 64.4 64.5 64.6 64.7 64.7 64.8 64.9 65.0 65.1 65.2 65.3 65.3 65.4 65.5 65.6 65.7 65.8 65.8 65.9 66.0 66.1 66.2 66.3 66.4 66.4 66.5 66.6 66.7 66.8 66.9 66.9 67.0 67.1 67.2 67.3 67.4 67.5 67.5 67.6 67.7 67.8 67.9 68.0 68.1 68.1 68.2 68.3 68.4 68.5 68.6 68.6 68.7 68.8 68.9 69.0 69.1 69.2 69.2 69.3 69.4 69.5 69.6 69.7 69.8 69.8 69.9 70.0 70.1 70.2 70.3 70.3 70.4 70.5 70.6 70.7 70.8 70.9 70.9 71.0 71.1 71.2 71.3 71.4 71.5 71.5 71.6 71.7 71.8 71.9 72.0 72.0 72.1 72.2 72.3 72.4 72.5 72.6 72.6 72.7 72.8 72.9 73.0 73.1 73.2 73.2 73.3 73.4 73.5 73.6 73.7 73.7 73.8 73.9 74.0 74.1 74.2 74.3 74.3 74.4 74.5 74.6 74.7 74.8 74.9 74.9 75.0 75.1 75.2 75.3 75.4 75.4 75.5 75.6 75.7 75.8 75.9 76.0 76.0 76.1 76.2 76.3 76.4 76.5 76.6 76.6 76.7 76.8 76.9 77.0 77.1 77.1 77.2 77.3 77.4 77.5 77.6 77.7 77.7 77.8 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.6 78.7 78.8 78.8 78.9 79.0 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.8 79.9 79.9 80.0 80.1 80.2 80.3 80.4 80.5 80.5 80.6 80.7 80.8 80.9 81.0 81.1 81.1 81.2 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.1 82.2 82.2 82.3 82.4 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.8 83.9 83.9 84.0 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.4 85.5 85.6 85.6 85.7 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.7 86.7 86.8 86.9 87.0 87.1 87.2 87.3 87.3 87.4 87.5 87.6 87.7 87.8 87.9 87.9 88.0 88.1 88.2 88.3 88.4 88.4 88.5 88.6 88.7 88.8 88.9 89.0 89.0 89.1 89.2 89.3 89.4 89.5 89.5 89.6 89.7 89.8 89.9 90.0 90.1 90.1 90.2 90.3 90.4 90.5 90.6 90.7 90.7 90.8 90.9 91.0 91.1 91.2 91.2 91.3 91.4 91.5 91.6 91.7 91.8 91.8 91.9 92.0 92.1 92.2 92.3 92.4 92.4 92.5 92.6 92.7 92.8 92.9 92.9 93.0 93.1 93.2 93.3 93.4 93.5 93.5 93.6 93.7 93.8 93.9 94.0 94.1 94.1 94.2 94.3 94.4 94.5 94.6 94.6 94.7 94.8 94.9 95.0 95.1 95.2 95.2 95.3 95.4 95.5 95.6 95.7 95.8 95.8 95.9 96.0 96.1 96.2 96.3 96.3 96.4 96.5 96.6 96.7 96.8 96.9 96.9 97.0 97.1 97.2 97.3 97.4 97.5 97.5 97.6 97.7 97.8 97.9 98.0 98.0 98.1 98.2 98.3 98.4 98.5 98.6 98.6 98.7 98.8 98.9 99.0 99.1 99.2 99.2 99.3 99.4 99.5 99.6 99.7 99.7 99.8 99.9 -found 46 predictions from path traversal Error with prediction: snap lend_intergenic: 23422, rend_intergenic: 2929 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35312, rend_intergenic: 26738 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 35898, rend_intergenic: 35312 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 49955, rend_intergenic: 36271 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62298, rend_intergenic: 50262 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86981, rend_intergenic: 67267 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 102758, rend_intergenic: 91732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 112912, rend_intergenic: 103207 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141028, rend_intergenic: 113867 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 142302, rend_intergenic: 142110 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 144955, rend_intergenic: 142340 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 154242, rend_intergenic: 149673 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176320, rend_intergenic: 156879 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 177273, rend_intergenic: 176706 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 193649, rend_intergenic: 178375 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 196004, rend_intergenic: 194066 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 201061, rend_intergenic: 197819 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 215200, rend_intergenic: 213476 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 225352, rend_intergenic: 215795 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 232256, rend_intergenic: 226125 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 237330, rend_intergenic: 235233 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 257709, rend_intergenic: 245934 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: GlimmerHMM lend_intergenic: 105337, rend_intergenic: 105334 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 24 predictions persist after filtering for low support