-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_6/scaffold_6_10471377-10686258

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_6-snap.2296-T1
Valid prediction for snap_scaffold_6-snap.2272-T1
Valid prediction for GeneMark_model.26492_t
Valid prediction for snap_scaffold_6-snap.2271-T1
Valid prediction for GeneMark_model.26520_t
Valid prediction for snap_scaffold_6-snap.2293-T1
Valid prediction for GeneMark_model.26498_t
Valid prediction for GlimmerHMM_glimmerT_15769-T1
Valid prediction for GeneMark_model.26485_t
Valid prediction for snap_scaffold_6-snap.2266-T1
Valid prediction for pasa_asmbl_47225.p2
Valid prediction for GlimmerHMM_glimmerT_15760-T1
Valid prediction for GeneMark_model.26500_t
Valid prediction for GeneMark_model.26517_t
Valid prediction for pasa_asmbl_47223.p1
Valid prediction for GlimmerHMM_glimmerT_15767-T1
Valid prediction for snap_scaffold_6-snap.2284-T1
Valid prediction for Augustus_model.g10560.t1
Valid prediction for GlimmerHMM_glimmerT_15754-T1
Valid prediction for GeneMark_model.26518_t
Valid prediction for Augustus_model.g10544.t1
Valid prediction for GeneMark_model.26512_t
Valid prediction for GeneMark_model.26503_t
Valid prediction for snap_scaffold_6-snap.2291-T1
Valid prediction for snap_scaffold_6-snap.2275-T1
Valid prediction for snap_scaffold_6-snap.2270-T1
Valid prediction for snap_scaffold_6-snap.2276-T1
Valid prediction for GeneMark_model.26487_t
Valid prediction for GeneMark_model.26507_t
Valid prediction for GeneMark_model.26515_t
Valid prediction for snap_scaffold_6-snap.2265-T1
Valid prediction for Augustus_model.g10550.t1
Valid prediction for snap_scaffold_6-snap.2283-T1
Valid prediction for Augustus_model.g10551.t1
Valid prediction for snap_scaffold_6-snap.2264-T1
Valid prediction for GeneMark_model.26510_t
Valid prediction for GlimmerHMM_glimmerT_15758-T1
Valid prediction for GlimmerHMM_glimmerT_15762-T1
Valid prediction for GeneMark_model.26496_t
Valid prediction for snap_scaffold_6-snap.2262-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.26526_t
Valid prediction for snap_scaffold_6-snap.2288-T1
Valid prediction for GeneMark_model.26523_t
Valid prediction for snap_scaffold_6-snap.2285-T1
Valid prediction for CodingQuarry_transcript_55065-T1
Valid prediction for GeneMark_model.26514_t
Valid prediction for snap_scaffold_6-snap.2282-T1
Valid prediction for snap_scaffold_6-snap.2294-T1
Valid prediction for GeneMark_model.26494_t
Valid prediction for HiQ_model.g10553.t1
Valid prediction for snap_scaffold_6-snap.2255-T1
Valid prediction for GeneMark_model.26531_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.26504_t
Valid prediction for GeneMark_model.26519_t
Valid prediction for GeneMark_model.26532_t
Valid prediction for snap_scaffold_6-snap.2273-T1
Valid prediction for GeneMark_model.26508_t
Valid prediction for Augustus_model.g10547.t1
Valid prediction for GeneMark_model.26493_t
Valid prediction for snap_scaffold_6-snap.2263-T1
Valid prediction for GeneMark_model.26528_t
Valid prediction for GlimmerHMM_glimmerT_15763-T1
Valid prediction for snap_scaffold_6-snap.2277-T1
Valid prediction for GlimmerHMM_glimmerT_15759-T1
Valid prediction for CodingQuarry_transcript_55061-T1
Valid prediction for GeneMark_model.26505_t
Valid prediction for GeneMark_model.26525_t
Valid prediction for GeneMark_model.26521_t
Valid prediction for snap_scaffold_6-snap.2281-T1
Valid prediction for GlimmerHMM_glimmerT_15766-T1
Valid prediction for Augustus_model.g10555.t1
Valid prediction for snap_scaffold_6-snap.2278-T1
Valid prediction for snap_scaffold_6-snap.2287-T1
Valid prediction for GeneMark_model.26484_t
Valid prediction for GeneMark_model.26489_t
Valid prediction for Augustus_model.g10546.t1
Valid prediction for Augustus_model.g10552.t1
Valid prediction for GeneMark_model.26502_t
Valid prediction for GeneMark_model.26490_t
Valid prediction for snap_scaffold_6-snap.2295-T1
Valid prediction for GeneMark_model.26486_t
Valid prediction for GlimmerHMM_glimmerT_15757-T1
Valid prediction for GeneMark_model.26497_t
Valid prediction for snap_scaffold_6-snap.2267-T1
Valid prediction for snap_scaffold_6-snap.2290-T1
Valid prediction for snap_scaffold_6-snap.2261-T1
Valid prediction for CodingQuarry_transcript_55063-T1
Valid prediction for GeneMark_model.26511_t
Valid prediction for pasa_asmbl_48641.p1
Valid prediction for HiQ_model.g10545.t1
Valid prediction for GlimmerHMM_glimmerT_15768-T1
Valid prediction for CodingQuarry_transcript_55062-T1
Valid prediction for GlimmerHMM_glimmerT_15756-T1
Valid prediction for Augustus_model.g10558.t1
Valid prediction for GeneMark_model.26491_t
Valid prediction for GeneMark_model.26529_t
Valid prediction for snap_scaffold_6-snap.2279-T1
Valid prediction for snap_scaffold_6-snap.2286-T1
Valid prediction for snap_scaffold_6-snap.2269-T1
Valid prediction for Augustus_model.g10557.t1
Valid prediction for GeneMark_model.26530_t
Valid prediction for GeneMark_model.26501_t
Valid prediction for snap_scaffold_6-snap.2260-T1
Valid prediction for snap_scaffold_6-snap.2280-T1
Valid prediction for snap_scaffold_6-snap.2289-T1
Valid prediction for Augustus_model.g10559.t1
Valid prediction for snap_scaffold_6-snap.2292-T1
Valid prediction for snap_scaffold_6-snap.2268-T1
Valid prediction for GeneMark_model.26495_t
Valid prediction for GeneMark_model.26499_t
Valid prediction for GlimmerHMM_glimmerT_15770-T1
Valid prediction for snap_scaffold_6-snap.2258-T1
Valid prediction for Augustus_model.g10554.t1
Valid prediction for GeneMark_model.26516_t
Valid prediction for pasa_asmbl_48643.p1
Valid prediction for Augustus_model.g10556.t1
Valid prediction for Augustus_model.g10548.t1
Valid prediction for GlimmerHMM_glimmerT_15755-T1
Valid prediction for snap_scaffold_6-snap.2257-T1
Valid prediction for GlimmerHMM_glimmerT_15764-T1
Valid prediction for GeneMark_model.26524_t
Valid prediction for GeneMark_model.26488_t
Valid prediction for GeneMark_model.26509_t
Valid prediction for snap_scaffold_6-snap.2274-T1
Valid prediction for GlimmerHMM_glimmerT_15761-T1
Valid prediction for pasa_asmbl_48642.p1
Valid prediction for Augustus_model.g10549.t1
Valid prediction for GeneMark_model.26506_t
Valid prediction for Augustus_model.g10561.t1
Valid prediction for GeneMark_model.26522_t
Valid prediction for snap_scaffold_6-snap.2256-T1
Valid prediction for snap_scaffold_6-snap.2259-T1
Valid prediction for Augustus_model.g10562.t1
Valid prediction for GeneMark_model.26527_t
Valid prediction for CodingQuarry_transcript_55064-T1
Valid prediction for GlimmerHMM_glimmerT_15753-T1
Valid prediction for GlimmerHMM_glimmerT_15765-T1
Valid prediction for GeneMark_model.26513_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 47609, rend_intergenic: 45056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87995, rend_intergenic: 84713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96465, rend_intergenic: 89586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160279, rend_intergenic: 156408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173455, rend_intergenic: 168170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177261, rend_intergenic: 175021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184308, rend_intergenic: 180442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 214882
-exon list size: 564


building trellis

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3.9    
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6.9    
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7.8    
8.0    
8.1    
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10.8    
11.0    
11.1    
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11.5    
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11.8    
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18.7    
18.9    
19.1    
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20.0    
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22.6    
22.8    
23.0    
23.1    
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23.5    
23.7    
23.9    
24.0    
24.2    
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24.9    
25.1    
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25.6    
25.8    
26.0    
26.1    
26.3    
26.5    
26.7    
26.9    
27.0    
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27.4    
27.6    
27.7    
27.9    
28.1    
28.3    
28.4    
28.6    
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29.0    
29.2    
29.3    
29.5    
29.7    
29.9    
30.0    
30.2    
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30.6    
30.7    
30.9    
31.1    
31.3    
31.4    
31.6    
31.8    
32.0    
32.2    
32.3    
32.5    
32.7    
32.9    
33.0    
33.2    
33.4    
33.6    
33.7    
33.9    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.2    
35.3    
35.5    
35.7    
35.9    
36.0    
36.2    
36.4    
36.6    
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36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.3    
38.5    
38.7    
38.9    
39.0    
39.2    
39.4    
39.6    
39.8    
39.9    
40.1    
40.3    
40.5    
40.6    
40.8    
41.0    
41.2    
41.3    
41.5    
41.7    
41.9    
42.0    
42.2    
42.4    
42.6    
42.8    
42.9    
43.1    
43.3    
43.5    
43.6    
43.8    
44.0    
44.2    
44.3    
44.5    
44.7    
44.9    
45.1    
45.2    
45.4    
45.6    
45.8    
45.9    
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46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.1    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.6    
49.8    
50.0    
50.2    
50.4    
50.5    
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50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
51.9    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
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53.9    
54.1    
54.2    
54.4    
54.6    
54.8    
54.9    
55.1    
55.3    
55.5    
55.7    
55.8    
56.0    
56.2    
56.4    
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57.1    
57.2    
57.4    
57.6    
57.8    
58.0    
58.1    
58.3    
58.5    
58.7    
58.8    
59.0    
59.2    
59.4    
59.5    
59.7    
59.9    
60.1    
60.2    
60.4    
60.6    
60.8    
61.0    
61.1    
61.3    
61.5    
61.7    
61.8    
62.0    
62.2    
62.4    
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63.1    
63.3    
63.4    
63.6    
63.8    
64.0    
64.1    
64.3    
64.5    
64.7    
64.8    
65.0    
65.2    
65.4    
65.5    
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65.9    
66.1    
66.3    
66.4    
66.6    
66.8    
67.0    
67.1    
67.3    
67.5    
67.7    
67.8    
68.0    
68.2    
68.4    
68.6    
68.7    
68.9    
69.1    
69.3    
69.4    
69.6    
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70.0    
70.1    
70.3    
70.5    
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70.8    
71.0    
71.2    
71.4    
71.6    
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71.9    
72.1    
72.3    
72.4    
72.6    
72.8    
73.0    
73.1    
73.3    
73.5    
73.7    
73.9    
74.0    
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74.4    
74.6    
74.7    
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75.1    
75.3    
75.4    
75.6    
75.8    
76.0    
76.1    
76.3    
76.5    
76.7    
76.9    
77.0    
77.2    
77.4    
77.6    
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77.9    
78.1    
78.3    
78.4    
78.6    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.9    
80.0    
80.2    
80.4    
80.6    
80.7    
80.9    
81.1    
81.3    
81.4    
81.6    
81.8    
82.0    
82.2    
82.3    
82.5    
82.7    
82.9    
83.0    
83.2    
83.4    
83.6    
83.7    
83.9    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.2    
85.3    
85.5    
85.7    
85.9    
86.0    
86.2    
86.4    
86.6    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.3    
88.5    
88.7    
88.9    
89.0    
89.2    
89.4    
89.6    
89.8    
89.9    
90.1    
90.3    
90.5    
90.6    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.9    
92.0    
92.2    
92.4    
92.6    
92.8    
92.9    
93.1    
93.3    
93.5    
93.6    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.9    
95.1    
95.2    
95.4    
95.6    
95.8    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.1    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 47609, rend_intergenic: 45056  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87995, rend_intergenic: 84713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96465, rend_intergenic: 89586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160279, rend_intergenic: 156408  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173455, rend_intergenic: 168170  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177261, rend_intergenic: 175021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 184308, rend_intergenic: 180442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support