-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_598

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62034-T1
Valid prediction for GlimmerHMM_glimmerT_62035-T1
Valid prediction for Augustus_model.g41236.t1
Valid prediction for GeneMark_model.108009_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 341, 460
Sorry, prediction GlimmerHMM_glimmerT_62036-T1 fails validation.
(GCG)	 AG	341-460	GT	AGG
(ACA)	 AG	619-671	GT	GGG
(GGG)	 AG	2283-2666	CC	GAC
-recovered GlimmerHMM_glimmerT_62036-T1, terminal, 2283, 2666
-recovered GlimmerHMM_glimmerT_62036-T1, internal, 341, 460
-recovered GlimmerHMM_glimmerT_62036-T1, internal, 619, 671
Couldn't classify 5268, 5469
Sorry, prediction snap_scaffold_598-snap.1-T1 fails validation.
(ATG)	 AG	1010-1015	GT	AGG
(GGG)	 AG	2283-2654	GT	TGG
(GAG)	 AG	2765-2875	GT	AGG
(AAG)	 AG	4899-5009	GT	GGG
(GTA)	 AG	5268-5469	GT	AAG
-recovered snap_scaffold_598-snap.1-T1, initial, 1010, 1015
-recovered snap_scaffold_598-snap.1-T1, internal, 1010, 1015
-recovered snap_scaffold_598-snap.1-T1, internal, 2283, 2654
-recovered snap_scaffold_598-snap.1-T1, internal, 2765, 2875
-recovered snap_scaffold_598-snap.1-T1, internal, 4899, 5009
-recovered snap_scaffold_598-snap.1-T1, internal, 5268, 5469
Valid prediction for Augustus_model.g41237.t1
Couldn't classify 1024, 1044
Sorry, prediction GeneMark_model.108010_t fails validation.
(AGG)	 AG	1024-1044	GT	GAG
(AGT)	 AG	1082-1091	GT	AGG
(GTG)	 AG	2236-2241	GT	CTG
(GGG)	 AG	2283-2662	GT	GCG
(GGG)	 AG	2714-2730	GT	AGG
(AGG)	 AG	2763-2862	GT	TGG
(CAT)	 AG	2886-2915	GT	CTG
(AGG)	 AG	3007-3030	GT	GAG
(AGG)	 AG	3061-3090	GT	GAG
(AGA)	 AG	3207-3215	GT	TTG
(TTA)	 AG	3240-3243	GA	AGG
-recovered GeneMark_model.108010_t, terminal, 3240, 3243
-recovered GeneMark_model.108010_t, internal, 1024, 1044
-recovered GeneMark_model.108010_t, internal, 1082, 1091
-recovered GeneMark_model.108010_t, internal, 2236, 2241
-recovered GeneMark_model.108010_t, internal, 2283, 2662
-recovered GeneMark_model.108010_t, internal, 2714, 2730
-recovered GeneMark_model.108010_t, internal, 2763, 2862
-recovered GeneMark_model.108010_t, internal, 2886, 2915
-recovered GeneMark_model.108010_t, internal, 3007, 3030
-recovered GeneMark_model.108010_t, internal, 3061, 3090
-recovered GeneMark_model.108010_t, internal, 3207, 3215

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5513
-exon list size: 48


building trellis

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-found 3 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support