-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_597

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 257, 382
Couldn't classify 5393, 5483
Sorry, prediction snap_scaffold_597-snap.2-T1 fails validation.
(TAG)	 AG	257-382	GT	TAG
(GGT)	 AG	857-1008	GT	AGG
(CTG)	 AG	3596-3811	GT	GCG
(CTT)	 AG	4311-4428	GT	CGG
(ACC)	 AG	5393-5483	GT	GGG
-recovered snap_scaffold_597-snap.2-T1, internal, 257, 382
-recovered snap_scaffold_597-snap.2-T1, internal, 857, 1008
-recovered snap_scaffold_597-snap.2-T1, internal, 3596, 3811
-recovered snap_scaffold_597-snap.2-T1, internal, 4311, 4428
-recovered snap_scaffold_597-snap.2-T1, internal, 5393, 5483
Couldn't classify 257, 382
Sorry, prediction Augustus_model.g41235.t1 fails validation.
(TAG)	 AG	257-382	GT	TAG
(GGT)	 AG	857-1008	GT	AGG
(GGC)	 AG	3611-3811	GT	GCG
(GCC)	 AG	4385-4432	CT	GAC
-recovered Augustus_model.g41235.t1, terminal, 4385, 4432
-recovered Augustus_model.g41235.t1, internal, 257, 382
-recovered Augustus_model.g41235.t1, internal, 857, 1008
-recovered Augustus_model.g41235.t1, internal, 3611, 3811

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5413, 5508
Sorry, prediction GeneMark_model.108007_t fails validation.
(ATG)	 GC	5110-5133	GT	AGG
(GCC)	 AG	5172-5338	GC	AGG
(GCA)	 AG	5377-5388	GT	AGG
(GAA)	 AG	5413-5508	GC	AGG
-recovered GeneMark_model.108007_t, initial, 5110, 5133
-recovered GeneMark_model.108007_t, internal, 5172, 5338
-recovered GeneMark_model.108007_t, internal, 5377, 5388
-recovered GeneMark_model.108007_t, internal, 5413, 5508
Couldn't classify 792, 917
Couldn't classify 5172, 5388
Sorry, prediction snap_scaffold_597-snap.1-T1 fails validation.
(GTA)	 AG	792-917	GT	ATG
(GCG)	 AG	1744-1814	GT	CTG
(GAG)	 AG	1824-1922	GT	TGG
(GCC)	 AG	5172-5388	GT	AGG
-recovered snap_scaffold_597-snap.1-T1, internal, 792, 917
-recovered snap_scaffold_597-snap.1-T1, internal, 1744, 1814
-recovered snap_scaffold_597-snap.1-T1, internal, 1824, 1922
-recovered snap_scaffold_597-snap.1-T1, internal, 5172, 5388
Sorry, intron length (8) is less than minimum required (10)
Valid prediction for GeneMark_model.108008_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4738, rend_intergenic: 257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5529
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4738, rend_intergenic: 257  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support