-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_596

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108005_t
Couldn't classify 41, 357
Couldn't classify 5043, 5114
Sorry, prediction snap_scaffold_596-snap.2-T1 fails validation.
(GGT)	 AG	41-357	GT	GGG
(GAA)	 AG	5043-5114	GT	CGG
-recovered snap_scaffold_596-snap.2-T1, internal, 41, 357
-recovered snap_scaffold_596-snap.2-T1, internal, 5043, 5114

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 107, 193
Couldn't classify 5215, 5503
Sorry, prediction snap_scaffold_596-snap.1-T1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GTG)	 AG	2641-2712	GT	TGG
(GAA)	 AG	5215-5503	GT	GGG
-recovered snap_scaffold_596-snap.1-T1, internal, 107, 193
-recovered snap_scaffold_596-snap.1-T1, internal, 381, 567
-recovered snap_scaffold_596-snap.1-T1, internal, 2641, 2712
-recovered snap_scaffold_596-snap.1-T1, internal, 5215, 5503
Couldn't classify 107, 193
Sorry, prediction GlimmerHMM_glimmerT_62033-T1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GTG)	 AG	2641-2712	GT	TGG
(CGT)	 AG	3432-3532	TG	AAT
-recovered GlimmerHMM_glimmerT_62033-T1, terminal, 3432, 3532
-recovered GlimmerHMM_glimmerT_62033-T1, internal, 107, 193
-recovered GlimmerHMM_glimmerT_62033-T1, internal, 381, 567
-recovered GlimmerHMM_glimmerT_62033-T1, internal, 2641, 2712
Couldn't classify 107, 193
Sorry, prediction GeneMark_model.108006_t fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GAG)	 AG	1734-1756	CT	AGC
-recovered GeneMark_model.108006_t, terminal, 1734, 1756
-recovered GeneMark_model.108006_t, internal, 107, 193
-recovered GeneMark_model.108006_t, internal, 381, 567
Couldn't classify 107, 193
Sorry, prediction Augustus_model.g41234.t1 fails validation.
(CTG)	 AG	107-193	GT	AGG
(GTG)	 AG	381-567	GT	GGG
(GTG)	 AG	2641-2712	GT	TGG
(TTG)	 AG	3741-3862	CC	GAC
-recovered Augustus_model.g41234.t1, terminal, 3741, 3862
-recovered Augustus_model.g41234.t1, internal, 107, 193
-recovered Augustus_model.g41234.t1, internal, 381, 567
-recovered Augustus_model.g41234.t1, internal, 2641, 2712
Valid prediction for GlimmerHMM_glimmerT_62032-T1
Couldn't classify 5237, 5503
Sorry, prediction GeneMark_model.108004_t fails validation.
(ATG)	 AA	4575-4669	GT	AGG
(GGA)	 AG	4700-4750	GC	GGG
(CAA)	 AG	4777-4899	GT	CTG
(TAC)	 AG	5023-5109	GT	GAG
(GAA)	 AG	5237-5503	GT	GGG
-recovered GeneMark_model.108004_t, initial, 4575, 4669
-recovered GeneMark_model.108004_t, internal, 4700, 4750
-recovered GeneMark_model.108004_t, internal, 4777, 4899
-recovered GeneMark_model.108004_t, internal, 5023, 5109
-recovered GeneMark_model.108004_t, internal, 5237, 5503

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5433, rend_intergenic: 41  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5539
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5433, rend_intergenic: 41  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support