-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_595

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.108002_t
Couldn't classify 5210, 5325
Sorry, prediction snap_scaffold_595-snap.2-T1 fails validation.
(ATG)	 AG	2215-2320	GT	AGG
(CCC)	 AG	5079-5120	GT	GGG
(AGG)	 AG	5210-5325	GT	AGG
-recovered snap_scaffold_595-snap.2-T1, initial, 2215, 2320
-recovered snap_scaffold_595-snap.2-T1, internal, 2215, 2320
-recovered snap_scaffold_595-snap.2-T1, internal, 5079, 5120
-recovered snap_scaffold_595-snap.2-T1, internal, 5210, 5325
Couldn't classify 5212, 5268
Sorry, prediction GeneMark_model.108003_t fails validation.
(ATG)	 AG	2215-2270	GT	GCG
(GGA)	 AG	2391-2409	GT	AGG
(GGG)	 AG	2432-2452	GT	AGG
(GGG)	 AG	2475-2518	GT	GTG
(TTT)	 AG	5037-5054	GT	AAG
(AGG)	 AG	5088-5120	GT	GGG
(GTC)	 AG	5212-5268	GT	CCG
-recovered GeneMark_model.108003_t, initial, 2215, 2270
-recovered GeneMark_model.108003_t, internal, 2215, 2270
-recovered GeneMark_model.108003_t, internal, 2391, 2409
-recovered GeneMark_model.108003_t, internal, 2432, 2452
-recovered GeneMark_model.108003_t, internal, 2475, 2518
-recovered GeneMark_model.108003_t, internal, 5037, 5054
-recovered GeneMark_model.108003_t, internal, 5088, 5120
-recovered GeneMark_model.108003_t, internal, 5212, 5268
Couldn't classify 214, 384
Sorry, prediction GeneMark_model.108000_t fails validation.
(GGG)	 AG	214-384	GT	AGG
(GAC)	 AG	410-461	GT	CGG
(AGC)	 AG	579-665	GG	GAG
-recovered GeneMark_model.108000_t, terminal, 579, 665
-recovered GeneMark_model.108000_t, internal, 214, 384
-recovered GeneMark_model.108000_t, internal, 410, 461

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.108001_t
Couldn't classify 3518, 3747
Sorry, prediction snap_scaffold_595-snap.1-T1 fails validation.
(GCA)	 AG	3518-3747	GT	GGG
(TTG)	 AG	3961-4101	GT	AAG
(TTG)	 AG	4859-4912	TT	GAT
-recovered snap_scaffold_595-snap.1-T1, terminal, 4859, 4912
-recovered snap_scaffold_595-snap.1-T1, internal, 3518, 3747
-recovered snap_scaffold_595-snap.1-T1, internal, 3961, 4101

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5543
-exon list size: 48


building trellis

2.0    
4.0    
6.0    
8.0    
10.0    
12.0    
14.0    
16.0    
18.0    
20.0    
22.0    
24.0    
26.0    
28.0    
30.0    
32.0    
34.0    
36.0    
38.0    
40.0    
42.0    
44.0    
46.0    
48.0    
50.0    
52.0    
54.0    
56.0    
58.0    
60.0    
62.0    
64.0    
66.0    
68.0    
70.0    
72.0    
74.0    
76.0    
78.0    
80.0    
82.0    
84.0    
86.0    
88.0    
90.0    
92.0    
94.0    
96.0    
98.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support