-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_593

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107997_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 152, 334
Sorry, prediction GeneMark_model.107998_t fails validation.
(GAG)	 AG	152-334	GT	AGG
(TAA)	 AG	872-874	AC	AAA
-recovered GeneMark_model.107998_t, terminal, 872, 874
-recovered GeneMark_model.107998_t, internal, 152, 334
Valid prediction for snap_scaffold_593-snap.2-T1
Couldn't classify 152, 334
Sorry, prediction Augustus_model.g41230.t1 fails validation.
(GAG)	 AG	152-334	GT	AGG
(GAT)	 AG	3244-3334	GT	CGG
(GCT)	 AG	3534-3646	CG	AAC
-recovered Augustus_model.g41230.t1, terminal, 3534, 3646
-recovered Augustus_model.g41230.t1, internal, 152, 334
-recovered Augustus_model.g41230.t1, internal, 3244, 3334
Valid prediction for snap_scaffold_593-snap.1-T1
Couldn't classify 152, 334
Sorry, prediction GlimmerHMM_glimmerT_62029-T1 fails validation.
(GAG)	 AG	152-334	GT	AGG
(GCT)	 AG	3534-3662	GC	AAG
-recovered GlimmerHMM_glimmerT_62029-T1, terminal, 3534, 3662
-recovered GlimmerHMM_glimmerT_62029-T1, internal, 152, 334
-recovered GlimmerHMM_glimmerT_62029-T1, internal, 3534, 3662

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5553
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support