-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_592

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 189, 268
Sorry, prediction Augustus_model.g41229.t1 fails validation.
(ACG)	 AG	189-268	GT	AGG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1734	GT	CTG
(GGC)	 AG	2172-2187	TC	GAT
-recovered Augustus_model.g41229.t1, terminal, 2172, 2187
-recovered Augustus_model.g41229.t1, internal, 189, 268
-recovered Augustus_model.g41229.t1, internal, 661, 708
-recovered Augustus_model.g41229.t1, internal, 864, 951
-recovered Augustus_model.g41229.t1, internal, 1387, 1461
-recovered Augustus_model.g41229.t1, internal, 1625, 1734
Couldn't classify 189, 367
Sorry, prediction GeneMark_model.107995_t fails validation.
(ACG)	 AG	189-367	GT	ATG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-932	GT	GAG
(GGA)	 AG	988-1021	GT	AGG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1797	GT	CAG
(AGA)	 AG	2366-2377	GT	ATG
(GCG)	 AG	3265-3282	GT	GGG
(ACT)	 AG	4011-4134	GA	GAG
-recovered GeneMark_model.107995_t, terminal, 4011, 4134
-recovered GeneMark_model.107995_t, internal, 189, 367
-recovered GeneMark_model.107995_t, internal, 661, 708
-recovered GeneMark_model.107995_t, internal, 864, 932
-recovered GeneMark_model.107995_t, internal, 988, 1021
-recovered GeneMark_model.107995_t, internal, 1387, 1461
-recovered GeneMark_model.107995_t, internal, 1625, 1797
-recovered GeneMark_model.107995_t, internal, 2366, 2377
-recovered GeneMark_model.107995_t, internal, 3265, 3282
Valid prediction for snap_scaffold_592-snap.1-T1
Valid prediction for GeneMark_model.107996_t
Valid prediction for GlimmerHMM_glimmerT_62028-T1
Couldn't classify 5167, 5349
Sorry, prediction snap_scaffold_592-snap.2-T1 fails validation.
(ATG)	 TC	474-529	GT	ATG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1786	GT	GGG
(GGC)	 AG	5167-5349	GT	GGG
-recovered snap_scaffold_592-snap.2-T1, initial, 474, 529
-recovered snap_scaffold_592-snap.2-T1, internal, 661, 708
-recovered snap_scaffold_592-snap.2-T1, internal, 864, 951
-recovered snap_scaffold_592-snap.2-T1, internal, 1387, 1461
-recovered snap_scaffold_592-snap.2-T1, internal, 1625, 1786
-recovered snap_scaffold_592-snap.2-T1, internal, 5167, 5349
Couldn't classify 189, 268
Couldn't classify 1780, 1810
Sorry, prediction pasa_asmbl_46574.p1 fails validation.
(ACG)	 AG	189-268	GT	AGG
(AGA)	 AG	661-708	GT	GGG
(ACC)	 AG	864-951	GT	CAG
(GGC)	 AG	1387-1461	GT	AGG
(GTG)	 AG	1625-1734	GT	CTG
(GGA)	 AG	1780-1810	GT	TAG
-recovered pasa_asmbl_46574.p1, internal, 189, 268
-recovered pasa_asmbl_46574.p1, internal, 661, 708
-recovered pasa_asmbl_46574.p1, internal, 864, 951
-recovered pasa_asmbl_46574.p1, internal, 1387, 1461
-recovered pasa_asmbl_46574.p1, internal, 1625, 1734
-recovered pasa_asmbl_46574.p1, internal, 1780, 1810

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5571
-exon list size: 40


building trellis

2.4    
4.8    
7.1    
9.5    
11.9    
14.3    
16.7    
19.0    
21.4    
23.8    
26.2    
28.6    
31.0    
33.3    
35.7    
38.1    
40.5    
42.9    
45.2    
47.6    
50.0    
52.4    
54.8    
57.1    
59.5    
61.9    
64.3    
66.7    
69.0    
71.4    
73.8    
76.2    
78.6    
81.0    
83.3    
85.7    
88.1    
90.5    
92.9    
95.2    
97.6    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support