-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_59

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61117-T1
Valid prediction for snap_scaffold_59-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61118-T1
Valid prediction for GlimmerHMM_glimmerT_61116-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61116-T1 5016-5221-terminal-1 is invalid.
Valid prediction for snap_scaffold_59-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61121-T1
Valid prediction for GeneMark_model.106322_t
Valid prediction for GlimmerHMM_glimmerT_61119-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106323_t
Valid prediction for snap_scaffold_59-snap.3-T1
Valid prediction for snap_scaffold_59-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_61122-T1
Valid prediction for GlimmerHMM_glimmerT_61120-T1
Valid prediction for Augustus_model.g40658.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25000
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 4 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support