-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_589

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62023-T1
Valid prediction for snap_scaffold_589-snap.1-T1
Couldn't classify 138, 149
Sorry, prediction GeneMark_model.107991_t fails validation.
(ACT)	 AG	138-149	GT	AGG
(TCC)	 AG	176-262	GT	ATG
(GAG)	 AG	441-597	GT	AGG
(GGG)	 AG	839-1050	CT	GAC
-recovered GeneMark_model.107991_t, terminal, 839, 1050
-recovered GeneMark_model.107991_t, internal, 138, 149
-recovered GeneMark_model.107991_t, internal, 176, 262
-recovered GeneMark_model.107991_t, internal, 441, 597
Couldn't classify 138, 262
Sorry, prediction Augustus_model.g41225.t1 fails validation.
(ACT)	 AG	138-262	GT	ATG
(GAG)	 AG	441-597	GT	AGG
(GGG)	 AG	839-1050	CT	GAC
-recovered Augustus_model.g41225.t1, terminal, 839, 1050
-recovered Augustus_model.g41225.t1, internal, 138, 262
-recovered Augustus_model.g41225.t1, internal, 441, 597

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 38, 176
Sorry, prediction GeneMark_model.107992_t fails validation.
(GCT)	 AG	38-176	GT	AAG
(GCG)	 AG	953-1003	GT	GAG
(GTT)	 AG	1669-1791	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered GeneMark_model.107992_t, terminal, 38, 176
-recovered GeneMark_model.107992_t, terminal, 2177, 2482
-recovered GeneMark_model.107992_t, internal, 38, 176
-recovered GeneMark_model.107992_t, internal, 953, 1003
-recovered GeneMark_model.107992_t, internal, 1669, 1791
-recovered GeneMark_model.107992_t, internal, 1958, 2075
Valid prediction for HiQ_model.g41226.t1
Couldn't classify 37, 176
Sorry, prediction pasa_asmbl_46569.p1 fails validation.
(GGC)	 TA	37-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered pasa_asmbl_46569.p1, terminal, 2177, 2482
-recovered pasa_asmbl_46569.p1, internal, 1958, 2075
Couldn't classify 38, 176
Sorry, prediction snap_scaffold_589-snap.2-T1 fails validation.
(GCT)	 AG	38-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered snap_scaffold_589-snap.2-T1, terminal, 38, 176
-recovered snap_scaffold_589-snap.2-T1, terminal, 2177, 2482
-recovered snap_scaffold_589-snap.2-T1, internal, 38, 176
-recovered snap_scaffold_589-snap.2-T1, internal, 1958, 2075
Couldn't classify 38, 176
Sorry, prediction GlimmerHMM_glimmerT_62024-T1 fails validation.
(GCT)	 AG	38-176	GT	AAG
(CGT)	 AG	1958-2075	GT	GGG
(TTC)	 AG	2177-2482	GA	AGG
-recovered GlimmerHMM_glimmerT_62024-T1, terminal, 38, 176
-recovered GlimmerHMM_glimmerT_62024-T1, terminal, 2177, 2482
-recovered GlimmerHMM_glimmerT_62024-T1, internal, 38, 176
-recovered GlimmerHMM_glimmerT_62024-T1, internal, 1958, 2075

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5579
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support