-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_587

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62020-T1
Couldn't classify 341, 471
Sorry, prediction GeneMark_model.107988_t fails validation.
(TTC)	 AG	341-471	GT	ACG
(GGA)	 AG	496-604	GT	TGG
(GAA)	 AG	1708-1763	GT	AGG
(TCA)	 AG	1786-1833	GT	AGG
(GAA)	 AG	1858-1875	GT	AGG
(TGA)	 AG	1896-1949	GT	GAG
(GCG)	 AG	1984-2004	GT	GGG
(GGG)	 AG	2030-2122	GT	TTG
(CCT)	 AG	2176-2367	GT	CTG
(AGG)	 AG	2412-2450	GT	TGG
(GTG)	 AG	2472-2552	GT	AGG
(GAG)	 AG	2576-2629	GT	AGG
(GGG)	 AG	2653-2661	GT	GAG
(AGG)	 AG	2695-2715	GT	AGG
(GGT)	 AG	2803-2808	GT	AGG
(GGA)	 AG	3025-3033	GT	GGG
(TGG)	 AG	3056-3124	GT	GCG
(TCG)	 AG	3249-3441	CC	GAC
-recovered GeneMark_model.107988_t, terminal, 3249, 3441
-recovered GeneMark_model.107988_t, internal, 341, 471
-recovered GeneMark_model.107988_t, internal, 496, 604
-recovered GeneMark_model.107988_t, internal, 1708, 1763
-recovered GeneMark_model.107988_t, internal, 1786, 1833
-recovered GeneMark_model.107988_t, internal, 1858, 1875
-recovered GeneMark_model.107988_t, internal, 1896, 1949
-recovered GeneMark_model.107988_t, internal, 1984, 2004
-recovered GeneMark_model.107988_t, internal, 2030, 2122
-recovered GeneMark_model.107988_t, internal, 2176, 2367
-recovered GeneMark_model.107988_t, internal, 2412, 2450
-recovered GeneMark_model.107988_t, internal, 2472, 2552
-recovered GeneMark_model.107988_t, internal, 2576, 2629
-recovered GeneMark_model.107988_t, internal, 2653, 2661
-recovered GeneMark_model.107988_t, internal, 2695, 2715
-recovered GeneMark_model.107988_t, internal, 2803, 2808
-recovered GeneMark_model.107988_t, internal, 3025, 3033
-recovered GeneMark_model.107988_t, internal, 3056, 3124
Valid prediction for Augustus_model.g41222.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 50, 271
Couldn't classify 5175, 5318
Sorry, prediction snap_scaffold_587-snap.1-T1 fails validation.
(GTG)	 AG	50-271	GT	CGG
(AGG)	 AG	3251-3447	GT	GGG
(GAG)	 AG	5046-5073	GT	AGG
(ACG)	 AG	5175-5318	GT	AAG
-recovered snap_scaffold_587-snap.1-T1, internal, 50, 271
-recovered snap_scaffold_587-snap.1-T1, internal, 3251, 3447
-recovered snap_scaffold_587-snap.1-T1, internal, 5046, 5073
-recovered snap_scaffold_587-snap.1-T1, internal, 5175, 5318
Valid prediction for Augustus_model.g41223.t1
Valid prediction for GeneMark_model.107989_t
Valid prediction for GlimmerHMM_glimmerT_62021-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5615
-exon list size: 54


building trellis

1.8    
3.6    
5.4    
7.1    
8.9    
10.7    
12.5    
14.3    
16.1    
17.9    
19.6    
21.4    
23.2    
25.0    
26.8    
28.6    
30.4    
32.1    
33.9    
35.7    
37.5    
39.3    
41.1    
42.9    
44.6    
46.4    
48.2    
50.0    
51.8    
53.6    
55.4    
57.1    
58.9    
60.7    
62.5    
64.3    
66.1    
67.9    
69.6    
71.4    
73.2    
75.0    
76.8    
78.6    
80.4    
82.1    
83.9    
85.7    
87.5    
89.3    
91.1    
92.9    
94.6    
96.4    
98.2    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support