-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_586

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5259, 5469
Sorry, prediction GeneMark_model.107987_t fails validation.
(ATG)	 TC	1913-1915	GT	TGG
(GTC)	 AG	2085-2183	GT	AGG
(TTC)	 AG	2466-2589	GT	AGG
(GGC)	 AG	2993-3099	GT	TGG
(GAG)	 AG	4877-4897	GT	GGG
(GCC)	 AG	5259-5469	GT	AGG
-recovered GeneMark_model.107987_t, initial, 1913, 1915
-recovered GeneMark_model.107987_t, internal, 2085, 2183
-recovered GeneMark_model.107987_t, internal, 2466, 2589
-recovered GeneMark_model.107987_t, internal, 2993, 3099
-recovered GeneMark_model.107987_t, internal, 4877, 4897
-recovered GeneMark_model.107987_t, internal, 5259, 5469
Couldn't classify 2085, 2183
Couldn't classify 5259, 5469
Sorry, prediction snap_scaffold_586-snap.2-T1 fails validation.
(GTC)	 AG	2085-2183	GT	AGG
(TTC)	 AG	2466-2589	GT	AGG
(GGC)	 AG	2993-3099	GT	TGG
(GAG)	 AG	4877-5002	GT	AGG
(GCC)	 AG	5259-5469	GT	AGG
-recovered snap_scaffold_586-snap.2-T1, internal, 2085, 2183
-recovered snap_scaffold_586-snap.2-T1, internal, 2466, 2589
-recovered snap_scaffold_586-snap.2-T1, internal, 2993, 3099
-recovered snap_scaffold_586-snap.2-T1, internal, 4877, 5002
-recovered snap_scaffold_586-snap.2-T1, internal, 5259, 5469
Couldn't classify 5259, 5469
Sorry, prediction GlimmerHMM_glimmerT_62019-T1 fails validation.
(ATG)	 GT	2100-2183	GT	AGG
(TTC)	 AG	2466-2589	GT	AGG
(GGC)	 AG	2993-3099	GT	TGG
(GAG)	 AG	4877-5002	GT	AGG
(GCC)	 AG	5259-5469	GT	AGG
-recovered GlimmerHMM_glimmerT_62019-T1, initial, 2100, 2183
-recovered GlimmerHMM_glimmerT_62019-T1, internal, 2466, 2589
-recovered GlimmerHMM_glimmerT_62019-T1, internal, 2993, 3099
-recovered GlimmerHMM_glimmerT_62019-T1, internal, 4877, 5002
-recovered GlimmerHMM_glimmerT_62019-T1, internal, 5259, 5469
Couldn't classify 539, 613
Couldn't classify 2993, 3093
Sorry, prediction pasa_asmbl_46568.p2 fails validation.
(CCC)	 GC	539-613	GT	CTG
(GTC)	 AG	2085-2183	GT	AGG
(TTC)	 AG	2466-2589	GT	AGG
(GGC)	 AG	2993-3093	GA	AGG
-recovered pasa_asmbl_46568.p2, internal, 2085, 2183
-recovered pasa_asmbl_46568.p2, internal, 2466, 2589
Couldn't classify 4506, 4547
Couldn't classify 5259, 5468
Sorry, prediction pasa_asmbl_46567.p1 fails validation.
(CTG)	 AC	4506-4547	GT	AGG
(GAG)	 AG	4877-5002	GT	AGG
(GCC)	 AG	5259-5468	GG	GAG
-recovered pasa_asmbl_46567.p1, internal, 4877, 5002
Couldn't classify 538, 613
Couldn't classify 5259, 5469
Sorry, prediction Augustus_model.g41221.t1 fails validation.
(CCC)	 AG	538-613	GT	CTG
(GTC)	 AG	2085-2183	GT	AGG
(TTC)	 AG	2466-2589	GT	AGG
(GGC)	 AG	2993-3099	GT	TGG
(GTA)	 AG	4482-4547	GT	AGG
(GAG)	 AG	4877-5002	GT	AGG
(GCC)	 AG	5259-5469	GT	AGG
-recovered Augustus_model.g41221.t1, internal, 538, 613
-recovered Augustus_model.g41221.t1, internal, 2085, 2183
-recovered Augustus_model.g41221.t1, internal, 2466, 2589
-recovered Augustus_model.g41221.t1, internal, 2993, 3099
-recovered Augustus_model.g41221.t1, internal, 4482, 4547
-recovered Augustus_model.g41221.t1, internal, 4877, 5002
-recovered Augustus_model.g41221.t1, internal, 5259, 5469

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 230, 300
Sorry, prediction snap_scaffold_586-snap.1-T1 fails validation.
(GCG)	 AG	230-300	GT	GTG
(ACA)	 AG	2548-2628	GT	AGG
(GTC)	 AG	3403-3606	TG	GAT
-recovered snap_scaffold_586-snap.1-T1, terminal, 3403, 3606
-recovered snap_scaffold_586-snap.1-T1, internal, 230, 300
-recovered snap_scaffold_586-snap.1-T1, internal, 2548, 2628

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5386, rend_intergenic: 2085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5615
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5386, rend_intergenic: 2085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support