-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_584

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 206, 346
Couldn't classify 5511, 5580
Sorry, prediction snap_scaffold_584-snap.2-T1 fails validation.
(GAT)	 AG	206-346	GT	TGG
(AAG)	 AG	1065-1237	GT	GGG
(TGG)	 AG	1638-1772	GT	AGG
(TGT)	 AG	4774-4910	GT	GGG
(GAA)	 AG	5511-5580	GT	GCG
-recovered snap_scaffold_584-snap.2-T1, internal, 206, 346
-recovered snap_scaffold_584-snap.2-T1, internal, 1065, 1237
-recovered snap_scaffold_584-snap.2-T1, internal, 1638, 1772
-recovered snap_scaffold_584-snap.2-T1, internal, 4774, 4910
-recovered snap_scaffold_584-snap.2-T1, internal, 5511, 5580
Couldn't classify 5511, 5619
Sorry, prediction GlimmerHMM_glimmerT_62018-T1 fails validation.
(ATG)	 TC	4284-4363	GT	CTG
(GAA)	 AG	5511-5619		GG
-recovered GlimmerHMM_glimmerT_62018-T1, initial, 4284, 4363
add_exon() Sorry, GlimmerHMM_glimmerT_62017-T1 1669-1841-single-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5116, 5449
Sorry, prediction GeneMark_model.107984_t fails validation.
(ATG)	 CC	838-851	GT	CGG
(GGA)	 AG	937-1083	GT	GAG
(GAG)	 AG	1105-1111	GC	GGG
(GGC)	 AG	1283-1343	GT	CAG
(GGT)	 AG	3731-3815	GT	AGG
(TCT)	 AG	3921-3997	GT	GAG
(GGG)	 AG	4365-4431	GT	GAG
(AGC)	 AG	4461-4541	GT	GAG
(CAA)	 AG	4949-5032	GT	AGG
(GAA)	 AG	5057-5095	GT	GAG
(AGG)	 AG	5116-5449	GT	CTG
-recovered GeneMark_model.107984_t, initial, 838, 851
-recovered GeneMark_model.107984_t, terminal, 3921, 3997
-recovered GeneMark_model.107984_t, terminal, 4365, 4431
-recovered GeneMark_model.107984_t, internal, 937, 1083
-recovered GeneMark_model.107984_t, internal, 1105, 1111
-recovered GeneMark_model.107984_t, internal, 1283, 1343
-recovered GeneMark_model.107984_t, internal, 3731, 3815
-recovered GeneMark_model.107984_t, internal, 3921, 3997
-recovered GeneMark_model.107984_t, internal, 4365, 4431
-recovered GeneMark_model.107984_t, internal, 4461, 4541
-recovered GeneMark_model.107984_t, internal, 4949, 5032
-recovered GeneMark_model.107984_t, internal, 5057, 5095
-recovered GeneMark_model.107984_t, internal, 5116, 5449
Couldn't classify 11, 33
Sorry, prediction GeneMark_model.107985_t fails validation.
(CCC)	 AG	11-33	GT	TGG
(TCA)	 AG	87-141	GT	CAG
(ACA)	 AG	167-211	GT	TGG
(GCA)	 AG	235-436	CC	AGC
-recovered GeneMark_model.107985_t, terminal, 235, 436
-recovered GeneMark_model.107985_t, internal, 11, 33
-recovered GeneMark_model.107985_t, internal, 87, 141
-recovered GeneMark_model.107985_t, internal, 167, 211
Couldn't classify 4944, 5449
Sorry, prediction snap_scaffold_584-snap.1-T1 fails validation.
(ATG)	 AG	3886-4007	GT	GTG
(AGC)	 AG	4461-4549	GT	CGG
(GAG)	 AG	4944-5449	GT	CTG
-recovered snap_scaffold_584-snap.1-T1, initial, 3886, 4007
-recovered snap_scaffold_584-snap.1-T1, internal, 3886, 4007
-recovered snap_scaffold_584-snap.1-T1, internal, 4461, 4549
-recovered snap_scaffold_584-snap.1-T1, internal, 4944, 5449

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1734, rend_intergenic: 206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5619
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1734, rend_intergenic: 206  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support