-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_580

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_580-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62014-T1
Couldn't classify 4848, 4876
Sorry, prediction GeneMark_model.107979_t fails validation.
(ATG)	 CC	3981-3988	GT	CCG
(GGT)	 AG	4150-4182	GT	GGG
(GCA)	 AG	4477-4555	GT	AGG
(GTG)	 AG	4577-4723	GT	AGG
(CTC)	 AG	4848-4876	GT	CCG
-recovered GeneMark_model.107979_t, initial, 3981, 3988
-recovered GeneMark_model.107979_t, internal, 4150, 4182
-recovered GeneMark_model.107979_t, internal, 4477, 4555
-recovered GeneMark_model.107979_t, internal, 4577, 4723
-recovered GeneMark_model.107979_t, internal, 4848, 4876

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5627
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support